HL_8VFT_014

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAA(OMG)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_014 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.13

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8VFT|1|5|C|368
8VFT|1|5|G|369
8VFT|1|5|U|370
8VFT|1|5|A|371
8VFT|1|5|A|372
8VFT|1|5|OMG|373

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain j

eL37

Chain l

eL39