8VFT Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8VFT_001 | 1/2/31:39 | tRNA anticodon loop | homologous HL_4V9Q_214 HL_81376.3 | |
| HL_8VFT_002 | 1/2/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4V90_034 NA | |
| HL_8VFT_003 | 1/3/31:39 | tRNA anticodon loop | homologous HL_6UFM_002 HL_81376.3 | |
| HL_8VFT_004 | 1/3/53:61 | T-loop with 2 stacked bulged bases | homologous HL_7LYF_003 HL_33597.3 | |
| HL_8VFT_005 | 1/5/37:44 | No text annotation | homologous HL_8P9A_113 HL_48677.1 | |
| HL_8VFT_006 | 1/5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8VFT_007 | 1/5/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_8VFT_008 | 1/5/131:137 | No text annotation | geometric HL_8VTW_010 NA | |
| HL_8VFT_009 | 1/5/204:211 | T-loop with 1 bulged base | homologous HL_8P9A_117 HL_13999.3 | |
| HL_8VFT_010 | 1/5/222:226 | No text annotation | geometric HL_2ZNI_001 HL_75660.7 | |
| HL_8VFT_011 | 1/5/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_8VFT_012 | 1/5/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8VFT_013 | 1/5/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_8VFT_014 | 1/5/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_8VFT_015 | 1/5/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_8VFT_017 | 1/5/962:970 | No text annotation | geometric HL_5XUZ_001 HL_69752.4 | |
| HL_8VFT_018 | 1/5/1178:1183 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8VFT_019 | 1/5/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_8VFT_020 | 1/5/1364:1373 | No text annotation | ||
| HL_8VFT_021 | 1/5/1389:1394 | GNRA | homologous HL_8P9A_128 HL_34789.4 | |
| HL_8VFT_022 | 1/5/1479:1486 | No text annotation | ||
| HL_8VFT_023 | 1/5/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
| HL_8VFT_024 | 1/5/1593:1602 | No text annotation | homologous HL_8P9A_132 HL_50204.1 | |
| HL_8VFT_025 | 1/5/1627:1635 | No text annotation | homologous HL_8P9A_133 HL_92598.1 | |
| HL_8VFT_026 | 1/5/1675:1680 | No text annotation | homologous HL_8P9A_134 HL_27530.1 | |
| HL_8VFT_028 | 1/5/1816:1823 | No text annotation | homologous HL_8C3A_024 NA | |
| HL_8VFT_029 | 1/5/1864:1870 | GNRA | homologous HL_8C3A_025 NA | |
| HL_8VFT_030 | 1/5/1886:1893 | No text annotation | homologous HL_8P9A_138 HL_47171.1 | |
| HL_8VFT_031 | 1/5/2006:2013 | No text annotation | ||
| HL_8VFT_032 | 1/5/2087:2270 | No text annotation | ||
| HL_8VFT_033 | 1/5/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8VFT_034 | 1/5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_8VFT_035 | 1/5/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_8VFT_036 | 1/5/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_8VFT_038 | 1/5/2523:2532 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_8VFT_040 | 1/5/2578:2583 | GNRA | homologous HL_8P9A_147 HL_34789.4 | |
| HL_8VFT_041 | 1/5/2624:2632 | Pseudoknot geometry | homologous HL_8P9A_148 HL_22758.1 | |
| HL_8VFT_042 | 1/5/2664:2670 | Other HL | geometric HL_4V9F_039 HL_67772.1 | |
| HL_8VFT_043 | 1/5/2705:2710 | No text annotation | geometric HL_5XUZ_001 HL_69752.4 | |
| HL_8VFT_044 | 1/5/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_8VFT_045 | 1/5/2792:2799 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_8VFT_046 | 1/5/2810:2816 | GNRA | homologous HL_8P9A_153 HL_34789.4 | |
| HL_8VFT_047 | 1/5/2872:2877 | UNCG | homologous HL_8C3A_043 NA | |
| HL_8VFT_048 | 1/5/2901:3598 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8VFT_049 | 1/5/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_8VFT_050 | 1/5/3639:3649 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_8VFT_051 | 1/5/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8VFT_052 | 1/5/3724:3729 | GNRA | homologous HL_8P9A_159 HL_34789.4 | |
| HL_8VFT_053 | 1/5/3757:3767 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_8VFT_054 | 1/5/3796:3804 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8VFT_055 | 1/5/3873:3882 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_8VFT_058 | 1/5/4193:4201 | No text annotation | homologous HL_8P9A_165 HL_11974.2 | |
| HL_8VFT_059 | 1/5/4210:4222 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
| HL_8VFT_060 | 1/5/4250:4258 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_8VFT_061 | 1/5/4270:4277 | Pseudoknot geometry | homologous HL_8P9A_168 HL_52651.2 | |
| HL_8VFT_062 | 1/5/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_8VFT_063 | 1/5/4321:4326 | GNRA | homologous HL_8P9A_170 HL_34789.4 | |
| HL_8VFT_064 | 1/5/4352:4362 | tRNA anticodon loop | geometric HL_8H1B_001 HL_86621.1 | |
| HL_8VFT_065 | 1/5/4417:4425 | No text annotation | homologous HL_8P9A_172 HL_52011.1 | |
| HL_8VFT_066 | 1/5/4474:4481 | GNRA variation | homologous HL_8P9A_173 HL_46665.2 | |
| HL_8VFT_067 | 1/5/4497:4503 | No text annotation | homologous HL_8P9A_174 HL_48677.1 | |
| HL_8VFT_068 | 1/5/4540:4545 | GNRA | homologous HL_8P9A_175 HL_34789.4 | |
| HL_8VFT_069 | 1/5/4603:4608 | GNRA | homologous HL_8P9A_176 HL_34789.4 | |
| HL_8VFT_070 | 1/5/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8VFT_071 | 1/5/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8VFT_073 | 1/5/4906:4915 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8VFT_074 | 1/5/4975:4983 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_8VFT_075 | 1/5/5021:5028 | Mini UNCG | homologous HL_8C3A_072 NA | |
| HL_8VFT_076 | 1/7/32:45 | No text annotation | geometric HL_8C3A_228 NA | |
| HL_8VFT_077 | 1/7/36:41 | No text annotation | homologous HL_8C3A_073 NA | |
| HL_8VFT_078 | 1/7/86:91 | GNRA | homologous HL_8P9A_185 HL_34789.4 | |
| HL_8VFT_079 | 1/8/55:62 | No text annotation | ||
| HL_8VFT_080 | 1/8/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_8VFT_081 | 1/8/107:112 | No text annotation | homologous HL_8C3A_076 NA | |
| HL_8VFT_082 | 1/8/121:129 | Mini UNCG | geometric HL_7A0S_039 HL_90436.3 | |
| HL_8VFT_083 | 1/9/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_8VFT_084 | 1/9/69:80 | No text annotation | ||
| HL_8VFT_085 | 1/9/156:162 | GNRA related | homologous HL_8C3A_194 NA | |
| HL_8VFT_087 | 1/9/288:295 | T-loop with 1 bulged base | homologous HL_8C3A_197 NA | |
| HL_8VFT_088 | 1/9/377:387 | No text annotation | ||
| HL_8VFT_089 | 1/9/416:421 | GNRA variation | homologous HL_8C3A_200 NA | |
| HL_8VFT_090 | 1/9/441:452 | No text annotation | homologous HL_8C3A_201 NA | |
| HL_8VFT_091 | 1/9/462:467 | UNCG | homologous HL_8C3A_202 NA | |
| HL_8VFT_092 | 1/9/498:504 | No text annotation | homologous HL_8P9A_201 HL_89167.2 | |
| HL_8VFT_094 | 1/9/566:584 | No text annotation | ||
| HL_8VFT_095 | 1/9/618:623 | GNRA variation | homologous HL_8C3A_206 NA | |
| HL_8VFT_096 | 1/9/820:828 | No text annotation | homologous HL_8C3A_208 NA | |
| HL_8VFT_098 | 1/9/957:966 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_8VFT_099 | 1/9/994:999 | GNRA | homologous HL_8P9A_210 HL_34789.4 | |
| HL_8VFT_100 | 1/9/1054:1064 | No text annotation | homologous HL_8C3A_213 NA | |
| HL_8VFT_101 | 1/9/1113:1120 | No text annotation | ||
| HL_8VFT_102 | 1/9/1141:1146 | GNRA | homologous HL_8C3A_215 NA | |
| HL_8VFT_103 | 1/9/1178:1183 | GNRA | homologous HL_8P9A_214 HL_34789.4 | |
| HL_8VFT_104 | 1/9/1245:1254 | No text annotation | homologous HL_8C3A_217 NA | |
| HL_8VFT_105 | 1/9/1295:1304 | GNRA wlth extra near cWW | homologous HL_8P9A_216 HL_98423.3 | |
| HL_8VFT_106 | 1/9/1353:1358 | GNRA | homologous HL_8P9A_217 HL_34789.4 | |
| HL_8VFT_107 | 1/9/1366:1373 | T-loop related | homologous HL_8P9A_218 HL_63894.2 | |
| HL_8VFT_108 | 1/9/1460:1466 | No text annotation | homologous HL_8P9A_220 HL_76371.2 | |
| HL_8VFT_109 | 1/9/1565:1570 | GNRA | homologous HL_8C3A_223 NA | |
| HL_8VFT_110 | 1/9/1614:1625 | No text annotation | ||
| HL_8VFT_111 | 1/9/1658:1666 | No text annotation | homologous HL_8C3A_225 NA | |
| HL_8VFT_112 | 1/9/1847:1852 | GNRA variation | homologous HL_8C3A_227 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8VFT_016 | No text annotation | ||
| HL_8VFT_027 | No text annotation | ||
| HL_8VFT_037 | No text annotation | ||
| HL_8VFT_039 | No text annotation | ||
| HL_8VFT_056 | No text annotation | ||
| HL_8VFT_057 | No text annotation | ||
| HL_8VFT_072 | No text annotation | ||
| HL_8VFT_086 | GNRA | ||
| HL_8VFT_093 | No text annotation | ||
| HL_8VFT_097 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8VFT_001 | 1/2/2:4, 1/2/69:71 | No text annotation | homologous IL_4WSM_380 NA | |
| IL_8VFT_002 | 1/5/6:7, 1/8/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_8VFT_003 | 1/5/12:14, 1/8/143:144 | Single bulged U | homologous IL_8P9A_232 IL_97561.3 | |
| IL_8VFT_004 | 1/5/16:18, 1/8/139:141 | Isolated non-canonical cWW pair | geometric IL_1Z7F_006 IL_01003.3 | |
| IL_8VFT_005 | 1/5/26:27, 1/5/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8VFT_006 | 1/5/30:37, 1/5/44:52 | No text annotation | homologous IL_8C3A_005 NA | |
| IL_8VFT_007 | 1/5/81:88, 1/5/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_8VFT_008 | 1/5/118:121, 1/5/152:153 | Multiple bulged bases | geometric IL_1R3E_001 IL_05670.1 | |
| IL_8VFT_009 | 1/5/118:122, 1/5/147:153 | No text annotation | ||
| IL_8VFT_010 | 1/5/121:122, 1/5/147:152 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_8VFT_011 | 1/5/125:126, 1/5/142:144 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_8VFT_013 | 1/5/182:189, 1/5/252:255 | No text annotation | ||
| IL_8VFT_014 | 1/5/195:196, 1/5/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_8VFT_015 | 1/5/199:201, 1/5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8VFT_016 | 1/5/339:342, 1/8/32:33 | No text annotation | geometric IL_8VTW_072 NA | |
| IL_8VFT_017 | 1/5/348:350, 1/8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_8VFT_018 | 1/5/387:390, 1/5/401:414 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_8VFT_019 | 1/5/415:421, 1/8/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_8VFT_020 | 1/5/443:446, 1/5/1300:1304 | No text annotation | geometric IL_7MLW_007 IL_49140.1 | |
| IL_8VFT_021 | 1/5/448:450, 1/5/1297:1298 | No text annotation | ||
| IL_8VFT_022 | 1/5/459:460, 1/5/695:697 | No text annotation | ||
| IL_8VFT_023 | 1/5/462:464, 1/5/691:693 | Isolated non-canonical cWW pair | geometric IL_3DIL_006 IL_01003.3 | |
| IL_8VFT_024 | 1/5/466:472, 1/5/682:689 | No text annotation | ||
| IL_8VFT_025 | 1/5/481:482, 1/5/672:673 | Single bulged C | geometric IL_8F5G_002 IL_05642.2 | |
| IL_8VFT_026 | 1/5/482:485, 1/5/671:672 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_8VFT_027 | 1/5/487:488, 1/5/665:669 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_8VFT_028 | 1/5/491:493, 1/5/661:662 | Single bulged U | geometric IL_4WF9_030 IL_97561.3 | |
| IL_8VFT_029 | 1/5/497:499, 1/5/656:657 | No text annotation | ||
| IL_8VFT_030 | 1/5/508:510, 1/5/649:650 | Single bulged A | geometric IL_8VM9_003 IL_14190.2 | |
| IL_8VFT_031 | 1/5/520:523, 1/5/638:641 | No text annotation | ||
| IL_8VFT_032 | 1/5/709:710, 1/5/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_28408.2 | |
| IL_8VFT_033 | 1/5/723:724, 1/5/942:945 | Multiple bulged bases | geometric IL_7Q80_003 IL_05670.1 | |
| IL_8VFT_034 | 1/5/727:731, 1/5/938:939 | No text annotation | ||
| IL_8VFT_035 | 1/5/732:735, 1/5/928:937 | No text annotation | ||
| IL_8VFT_036 | 1/5/737:739, 1/5/923:926 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_8VFT_037 | 1/5/745:752, 1/5/911:919 | No text annotation | geometric IL_8C3A_022 NA | |
| IL_8VFT_038 | 1/5/1074:1076, 1/5/1234:1236 | Isolated non-canonical cWW pair | geometric IL_8AF0_001 IL_01003.3 | |
| IL_8VFT_039 | 1/5/1077:1080, 1/5/1219:1233 | No text annotation | ||
| IL_8VFT_040 | 1/5/1082:1084, 1/5/1213:1217 | Isolated non-canonical cWW pair | geometric IL_1Z7F_006 IL_01003.3 | |
| IL_8VFT_041 | 1/5/1086:1087, 1/5/1209:1211 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_8VFT_044 | 1/5/1173:1175, 1/5/1186:1188 | Isolated cWH basepair | geometric IL_2R1S_002 IL_10892.2 | |
| IL_8VFT_045 | 1/5/1357:1360, 1/5/1379:1382 | No text annotation | ||
| IL_8VFT_046 | 1/5/1357:1361, 1/5/1376:1382 | No text annotation | ||
| IL_8VFT_047 | 1/5/1360:1361, 1/5/1376:1379 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_8VFT_048 | 1/5/1425:1429, 1/5/1455:1460 | No text annotation | geometric IL_3BBM_001 IL_47352.2 | |
| IL_8VFT_049 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared | geometric IL_8C3A_475 NA | |
| IL_8VFT_050 | 1/5/1467:1468, 1/5/1496:1498 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_8VFT_051 | 1/5/1474:1476, 1/5/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_15011.2 | |
| IL_8VFT_052 | 1/5/1520:1522, 1/5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_8VFT_053 | 1/5/1522:1526, 1/5/1648:1655 | No text annotation | homologous IL_8P9A_256 IL_73855.1 | |
| IL_8VFT_054 | 1/5/1550:1551, 1/5/1576:1578 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_8VFT_055 | 1/5/1551:1555, 1/5/1572:1576 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_8VFT_056 | 1/5/1586:1589, 1/5/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_8VFT_057 | 1/5/1590:1592, 1/5/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_8VFT_058 | 1/5/1624:1626, 1/5/1636:1640 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_8VFT_059 | 1/5/1671:1673, 1/5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8P9A_262 IL_71625.3 | |
| IL_8VFT_060 | 1/5/1686:1688, 1/5/1848:1851 | No text annotation | ||
| IL_8VFT_061 | 1/5/1694:1721, 1/5/1841:1842 | No text annotation | ||
| IL_8VFT_062 | 1/5/1723:1725, 1/5/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_8VFT_063 | 1/5/1732:1737, 1/5/1792:1797 | No text annotation | ||
| IL_8VFT_064 | 1/5/1737:1738, 1/5/1790:1792 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_8VFT_065 | 1/5/1739:1744, 1/5/1786:1789 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_8VFT_066 | 1/5/1746:1749, 1/5/1781:1784 | No text annotation | homologous IL_8C3A_481 NA | |
| IL_8VFT_067 | 1/5/1749:1751, 1/5/1779:1781 | Isolated non-canonical cWW pair | homologous IL_8P9A_270 IL_01003.3 | |
| IL_8VFT_068 | 1/5/1753:1756, 1/5/1776:1777 | Major groove minor groove platform; mini C-loop | geometric IL_1U9S_004 IL_73108.2 | |
| IL_8VFT_069 | 1/5/1814:1816, 1/5/1823:1824 | Single bulged A | homologous IL_8P9A_273 IL_14190.2 | |
| IL_8VFT_070 | 1/5/1858:1860, 1/5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_01003.3 | |
| IL_8VFT_072 | 1/5/1905:1909, 1/5/2067:2071 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8VFT_073 | 1/5/1911:1918, 1/5/2064:2065 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_8VFT_074 | 1/5/1918:1920, 1/5/2063:2064 | No text annotation | ||
| IL_8VFT_075 | 1/5/1920:1922, 1/5/2062:2063 | No text annotation | ||
| IL_8VFT_076 | 1/5/1926:1933, 1/5/2053:2058 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_8VFT_077 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation | homologous IL_8P9A_280 IL_34501.1 | |
| IL_8VFT_078 | 1/5/1946:1948, 1/5/2035:2036 | Single bulged U | homologous IL_8P9A_281 IL_97561.3 | |
| IL_8VFT_079 | 1/5/1957:1965, 1/5/2022:2026 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_8VFT_080 | 1/5/1973:1977, 1/5/1989:1993 | No text annotation | homologous IL_8P9A_283 IL_16218.3 | |
| IL_8VFT_081 | 1/5/2083:2085, 1/5/2272:2273 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_8VFT_082 | 1/5/2290:2292, 1/5/2342:2345 | No text annotation | homologous IL_8P9A_285 IL_42997.5 | |
| IL_8VFT_083 | 1/5/2299:2301, 1/5/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_8VFT_084 | 1/5/2302:2309, 1/5/2329:2333 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_8VFT_085 | 1/5/2312:2314, 1/5/2325:2326 | Single bulged A | geometric IL_7DLZ_001 NA | |
| IL_8VFT_086 | 1/5/2358:2364, 1/5/3858:3863 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_8VFT_087 | 1/5/2415:2419, 1/5/2427:2429 | C-loop | homologous IL_8C3A_482 NA | |
| IL_8VFT_088 | 1/5/2446:2450, 1/5/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_8VFT_089 | 1/5/2477:2479, 1/5/2499:2500 | Minor groove platform | geometric IL_6DLR_003 IL_34520.3 | |
| IL_8VFT_090 | 1/5/2542:2547, 1/5/2772:2774 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 NA | |
| IL_8VFT_091 | 1/5/2549:2550, 1/5/2768:2770 | No text annotation | homologous IL_8C3A_483 NA | |
| IL_8VFT_092 | 1/5/2589:2593, 1/5/2752:2756 | Triple sheared | homologous IL_8P9A_295 IL_15190.2 | |
| IL_8VFT_093 | 1/5/2613:2614, 1/5/2724:2726 | Single bulged C | homologous IL_8P9A_297 IL_05642.2 | |
| IL_8VFT_094 | 1/5/2614:2615, 1/5/2722:2724 | Single stack bend | homologous IL_8P9A_298 IL_15011.2 | |
| IL_8VFT_095 | 1/5/2646:2648, 1/5/2685:2688 | Decoding loop related | geometric IL_2O3X_003 IL_53541.1 | |
| IL_8VFT_096 | 1/5/2651:2653, 1/5/2681:2682 | Single bulged G | geometric IL_6TFF_002 IL_28408.2 | |
| IL_8VFT_097 | 1/5/2656:2662, 1/5/2672:2678 | No text annotation | homologous IL_8P9A_301 IL_93476.1 | |
| IL_8VFT_098 | 1/5/2704:2705, 1/5/2710:2712 | No text annotation | ||
| IL_8VFT_099 | 1/5/2832:2838, 1/5/3850:3853 | No text annotation | homologous IL_8P9A_302 IL_89862.1 | |
| IL_8VFT_100 | 1/5/2844:2846, 1/5/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_8VFT_101 | 1/5/2847:2850, 1/5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_8VTW_065 NA | |
| IL_8VFT_102 | 1/5/2847:2855, 1/5/3837:3841 | No text annotation | geometric IL_8C3A_484 NA | |
| IL_8VFT_103 | 1/5/2850:2855, 1/5/3837:3840 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_8VFT_104 | 1/5/2867:2872, 1/5/2877:2883 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_8VFT_105 | 1/5/2889:2891, 1/5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8VFT_106 | 1/5/2896:2897, 1/5/3602:3605 | No text annotation | homologous IL_8P9A_309 IL_18824.1 | |
| IL_8VFT_107 | 1/5/3632:3633, 1/5/3827:3829 | Single bulged A | homologous IL_8P9A_310 IL_14190.2 | |
| IL_8VFT_108 | 1/5/3660:3665, 1/5/3677:3684 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_8VFT_109 | 1/5/3700:3703, 1/5/3749:3750 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_8VFT_110 | 1/5/3704:3705, 1/5/3745:3748 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_8VFT_111 | 1/5/3708:3710, 1/5/3741:3742 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_8VFT_112 | 1/5/3710:3714, 1/5/3739:3741 | No text annotation | geometric IL_8C3A_092 NA | |
| IL_8VFT_113 | 1/5/3715:3721, 1/5/3732:3738 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_8VFT_114 | 1/5/3780:3781, 1/5/3811:3814 | No text annotation | geometric IL_8C3A_094 NA | |
| IL_8VFT_115 | 1/5/3781:3792, 1/5/3808:3811 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_8VFT_116 | 1/5/3895:3898, 1/5/4563:4565 | No text annotation | homologous IL_8P9A_319 IL_75527.2 | |
| IL_8VFT_117 | 1/5/3900:3902, 1/5/4558:4561 | No text annotation | homologous IL_8P9A_320 IL_80025.1 | |
| IL_8VFT_118 | 1/5/3913:3915, 1/5/4388:4389 | Single bulged U | homologous IL_8P9A_321 IL_97561.3 | |
| IL_8VFT_119 | 1/5/3916:3917, 1/5/4384:4387 | Minor groove platform | homologous IL_8P9A_322 IL_34520.3 | |
| IL_8VFT_120 | 1/5/3927:3929, 1/5/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_8VFT_121 | 1/5/4082:4088, 1/5/4161:4164 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_8VFT_125 | 1/5/4191:4192, 1/5/4202:4204 | Single bulged A | homologous IL_8P9A_325 IL_14190.2 | |
| IL_8VFT_126 | 1/5/4243:4245, 1/5/4263:4267 | No text annotation | homologous IL_8P9A_326 IL_14250.1 | |
| IL_8VFT_127 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A | geometric IL_7MKY_001 IL_14190.2 | |
| IL_8VFT_128 | 1/5/4295:4298, 1/5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_8P9A_327 IL_15225.2 | |
| IL_8VFT_129 | 1/5/4347:4350, 1/5/4364:4365 | Single stack bend | geometric IL_5TBW_101 NA | |
| IL_8VFT_130 | 1/5/4400:4401, 1/5/4442:4444 | Major groove platform | homologous IL_8P9A_329 IL_48076.8 | |
| IL_8VFT_131 | 1/5/4401:4403, 1/5/4440:4442 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_01003.3 | |
| IL_8VFT_132 | 1/5/4403:4405, 1/5/4439:4440 | No text annotation | homologous IL_8P9A_331 IL_46637.2 | |
| IL_8VFT_133 | 1/5/4405:4407, 1/5/4435:4439 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_8VFT_134 | 1/5/4412:4416, 1/5/4426:4430 | Double sheared with non-canonical cWW | homologous IL_8P9A_333 IL_87767.2 | |
| IL_8VFT_135 | 1/5/4453:4454, 1/5/4526:4528 | No text annotation | homologous IL_8P9A_334 IL_46637.2 | |
| IL_8VFT_136 | 1/5/4456:4458, 1/5/4520:4524 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_335 IL_68118.3 | |
| IL_8VFT_137 | 1/5/4458:4459, 1/5/4517:4520 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_8VFT_138 | 1/5/4466:4470, 1/5/4485:4491 | No text annotation | ||
| IL_8VFT_139 | 1/5/4495:4497, 1/5/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_8VFT_140 | 1/5/4537:4538, 1/5/4547:4549 | Single bulged A | geometric IL_5TBW_060 NA | |
| IL_8VFT_141 | 1/5/4580:4582, 1/5/4721:4723 | Isolated cWH basepair | geometric IL_3R1D_003 IL_10892.2 | |
| IL_8VFT_142 | 1/5/4582:4585, 1/5/4717:4721 | Double sheared | homologous IL_8P9A_342 IL_58355.2 | |
| IL_8VFT_143 | 1/5/4590:4592, 1/5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_71625.3 | |
| IL_8VFT_144 | 1/5/4596:4603, 1/5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_344 IL_62167.3 | |
| IL_8VFT_145 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation | ||
| IL_8VFT_146 | 1/5/4632:4637, 1/5/4662:4666 | No text annotation | homologous IL_8P9A_346 IL_98200.1 | |
| IL_8VFT_147 | 1/5/4638:4640, 1/5/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10892.2 | |
| IL_8VFT_148 | 1/5/4641:4642, 1/5/4655:4658 | No text annotation | homologous IL_8P9A_347 NA | |
| IL_8VFT_149 | 1/5/4680:4685, 1/5/4705:4710 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_8VFT_150 | 1/5/4739:4743, 1/5/4957:4960 | No text annotation | ||
| IL_8VFT_151 | 1/5/4743:4746, 1/5/4954:4957 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_8VFT_152 | 1/5/4756:4766, 1/5/4868:4877 | No text annotation | homologous IL_8P9A_352 IL_28855.1 | |
| IL_8VFT_153 | 1/5/4769:4773, 1/5/4862:4865 | No text annotation | geometric IL_2OE5_002 IL_34618.2 | |
| IL_8VFT_154 | 1/5/4885:4888, 1/5/4931:4934 | Tandem non-canonical cWW pairs | geometric IL_4K27_002 IL_71194.2 | |
| IL_8VFT_155 | 1/5/4992:4994, 1/5/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3IVK_002 IL_01003.3 | |
| IL_8VFT_156 | 1/5/4996:4997, 1/5/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_05642.2 | |
| IL_8VFT_157 | 1/5/5000:5002, 1/5/5045:5050 | No text annotation | homologous IL_8P9A_359 IL_00086.1 | |
| IL_8VFT_158 | 1/5/5003:5009, 1/5/5039:5044 | No text annotation | ||
| IL_8VFT_159 | 1/5/5012:5014, 1/5/5035:5036 | Single bulged U | homologous IL_8P9A_361 IL_97561.3 | |
| IL_8VFT_160 | 1/5/5014:5017, 1/5/5032:5035 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_8VFT_161 | 1/7/15:16, 1/7/62:64 | Single bulged A | homologous IL_8C3A_143 NA | |
| IL_8VFT_162 | 1/7/21:27, 1/7/52:57 | Minor groove platform related | homologous IL_8C3A_144 NA | |
| IL_8VFT_163 | 1/7/28:29, 1/7/48:51 | No text annotation | homologous IL_9DFE_112 IL_73108.2 | |
| IL_8VFT_164 | 1/7/32:36, 1/7/41:45 | No text annotation | homologous IL_9DFE_113 IL_58103.12 | |
| IL_8VFT_165 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_148 NA | |
| IL_8VFT_166 | 1/7/79:81, 1/7/95:97 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_71625.3 | |
| IL_8VFT_167 | 1/7/82:85, 1/7/92:94 | Isolated non-canonical cWW pair | homologous IL_8P9A_370 IL_01003.3 | |
| IL_8VFT_168 | 1/8/44:64, 1/8/95:99 | No text annotation | homologous IL_8C3A_150 NA | |
| IL_8VFT_169 | 1/8/64:66, 1/8/92:95 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_76400.1 | |
| IL_8VFT_170 | 1/9/23:25, 1/9/649:651 | Isolated non-canonical cWW pair | geometric IL_1U9S_007 IL_01003.3 | |
| IL_8VFT_171 | 1/9/34:36, 1/9/519:521 | Isolated non-canonical cWW pair | homologous IL_8C3A_393 NA | |
| IL_8VFT_172 | 1/9/37:40, 1/9/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.2 | |
| IL_8VFT_173 | 1/9/41:47, 1/9/479:481 | No text annotation | geometric IL_4V88_387 NA | |
| IL_8VFT_174 | 1/9/49:51, 1/9/476:477 | Minor groove platform | homologous IL_8C3A_396 NA | |
| IL_8VFT_175 | 1/9/57:62, 1/9/86:88 | No text annotation | homologous IL_8P9A_378 IL_61299.6 | |
| IL_8VFT_176 | 1/9/63:68, 1/9/81:85 | No text annotation | homologous IL_8P9A_379 IL_21667.2 | |
| IL_8VFT_177 | 1/9/108:112, 1/9/349:353 | Triple non-canonical cWW pairs | geometric IL_8VMB_003 IL_71154.3 | |
| IL_8VFT_178 | 1/9/112:115, 1/9/348:349 | Multiple bulged bases | homologous IL_8C3A_400 NA | |
| IL_8VFT_179 | 1/9/116:121, 1/9/343:347 | No text annotation | homologous IL_8P9A_382 IL_31545.1 | |
| IL_8VFT_180 | 1/9/145:151, 1/9/167:174 | No text annotation | homologous IL_8C3A_402 NA | |
| IL_8VFT_181 | 1/9/152:154, 1/9/164:166 | No text annotation | homologous IL_8P9A_384 IL_87720.1 | |
| IL_8VFT_182 | 1/9/188:192, 1/9/207:211 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_8VFT_183 | 1/9/216:219, 1/9/302:309 | Tandem non-canonical cWW pairs | geometric IL_1GID_008 NA | |
| IL_8VFT_184 | 1/9/312:314, 1/9/336:337 | Single bulged A | homologous IL_8P9A_388 IL_14190.2 | |
| IL_8VFT_185 | 1/9/317:320, 1/9/331:333 | No text annotation | homologous IL_8P9A_389 IL_15698.5 | |
| IL_8VFT_186 | 1/9/359:364, 1/9/396:403 | Kink-turn with non-sequential stacking | homologous IL_8C3A_410 NA | |
| IL_8VFT_187 | 1/9/366:371, 1/9/393:394 | No text annotation | homologous IL_8P9A_392 IL_01372.1 | |
| IL_8VFT_188 | 1/9/411:413, 1/9/424:429 | No text annotation | homologous IL_8C3A_412 NA | |
| IL_8VFT_189 | 1/9/437:439, 1/9/454:456 | Isolated cWH basepair | homologous IL_8C3A_413 NA | |
| IL_8VFT_190 | 1/9/459:461, 1/9/468:470 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
| IL_8VFT_191 | 1/9/487:489, 1/9/511:512 | Single bulged U | homologous IL_8P9A_396 IL_97561.3 | |
| IL_8VFT_192 | 1/9/491:495, 1/9/508:509 | C-loop | homologous IL_8C3A_416 NA | |
| IL_8VFT_193 | 1/9/495:496, 1/9/506:508 | Single bulged G | homologous IL_8P9A_398 IL_28408.2 | |
| IL_8VFT_195 | 1/9/563:565, 1/9/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_8VFT_196 | 1/9/599:608, 1/9/635:637 | No text annotation | ||
| IL_8VFT_197 | 1/9/611:617, 1/9/624:632 | Kink-turn related | homologous IL_8C3A_425 NA | |
| IL_8VFT_198 | 1/9/663:665, 1/9/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.3 | |
| IL_8VFT_199 | 1/9/665:671, 1/9/1161:1162 | No text annotation | homologous IL_8C3A_426 NA | |
| IL_8VFT_200 | 1/9/673:675, 1/9/1030:1032 | Isolated non-canonical cWW pair | homologous IL_8C3A_427 NA | |
| IL_8VFT_201 | 1/9/676:680, 1/9/1025:1029 | tSH-tHW-tHS | homologous IL_8C3A_428 NA | |
| IL_8VFT_204 | 1/9/802:803, 1/9/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_8C3A_430 NA | |
| IL_8VFT_205 | 1/9/805:807, 1/9/856:858 | Isolated non-canonical cWW pair | homologous IL_8P9A_413 IL_71625.3 | |
| IL_8VFT_206 | 1/9/807:815, 1/9/849:856 | No text annotation | homologous IL_8C3A_503 NA | |
| IL_8VFT_207 | 1/9/874:876, 1/9/910:912 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_01003.3 | |
| IL_8VFT_208 | 1/9/877:879, 1/9/907:909 | Isolated non-canonical cWW pair | geometric IL_5J7L_061 NA | |
| IL_8VFT_209 | 1/9/922:923, 1/9/1019:1022 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_74641.2 | |
| IL_8VFT_210 | 1/9/925:927, 1/9/1014:1017 | Isolated cWH basepair | homologous IL_8C3A_510 NA | |
| IL_8VFT_211 | 1/9/928:931, 1/9/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_8C3A_437 NA | |
| IL_8VFT_212 | 1/9/931:935, 1/9/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_8C3A_438 NA | |
| IL_8VFT_213 | 1/9/942:945, 1/9/981:984 | Tandem non-canonical cWW pairs | homologous IL_8P9A_421 IL_15225.2 | |
| IL_8VFT_214 | 1/9/952:956, 1/9/967:974 | Kink-turn | geometric IL_4V88_434 NA | |
| IL_8VFT_215 | 1/9/1042:1047, 1/9/1071:1073 | No text annotation | homologous IL_8C3A_441 NA | |
| IL_8VFT_216 | 1/9/1047:1051, 1/9/1067:1071 | tSH-tHW-tHS | homologous IL_8C3A_442 NA | |
| IL_8VFT_217 | 1/9/1091:1093, 1/9/1152:1158 | No text annotation | homologous IL_8P9A_425 IL_82706.2 | |
| IL_8VFT_218 | 1/9/1098:1103, 1/9/1129:1134 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_8VFT_219 | 1/9/1108:1110, 1/9/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_8VFT_220 | 1/9/1168:1175, 1/9/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8P9A_428 IL_84044.1 | |
| IL_8VFT_221 | 1/9/1203:1204, 1/9/1694:1696 | Single bulged A | homologous IL_8C3A_447 NA | |
| IL_8VFT_222 | 1/9/1206:1208, 1/9/1691:1692 | Single bulged G | homologous IL_8P9A_430 IL_28408.2 | |
| IL_8VFT_223 | 1/9/1214:1217, 1/9/1681:1685 | C-loop | homologous IL_8C3A_449 NA | |
| IL_8VFT_224 | 1/9/1230:1232, 1/9/1526:1528 | Isolated non-canonical cWW pair | homologous IL_8C3A_450 NA | |
| IL_8VFT_225 | 1/9/1235:1236, 1/9/1521:1523 | Minor groove platform | homologous IL_8C3A_451 NA | |
| IL_8VFT_226 | 1/9/1270:1272, 1/9/1510:1512 | Isolated non-canonical cWW pair | homologous IL_8C3A_452 NA | |
| IL_8VFT_227 | 1/9/1281:1287, 1/9/1314:1316 | No text annotation | ||
| IL_8VFT_228 | 1/9/1281:1290, 1/9/1309:1316 | No text annotation | ||
| IL_8VFT_229 | 1/9/1287:1290, 1/9/1309:1314 | No text annotation | ||
| IL_8VFT_230 | 1/9/1291:1294, 1/9/1305:1308 | No text annotation | ||
| IL_8VFT_231 | 1/9/1325:1327, 1/9/1502:1503 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_8VFT_232 | 1/9/1329:1335, 1/9/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_8VFT_233 | 1/9/1337:1338, 1/9/1488:1490 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_8VFT_234 | 1/9/1347:1349, 1/9/1380:1382 | Isolated cWH basepair | homologous IL_8P9A_442 IL_10892.2 | |
| IL_8VFT_235 | 1/9/1363:1365, 1/9/1374:1375 | Minor groove platform | homologous IL_8C3A_460 NA | |
| IL_8VFT_236 | 1/9/1395:1399, 1/9/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_8P9A_419 IL_15225.2 | |
| IL_8VFT_237 | 1/9/1402:1405, 1/9/1441:1444 | No text annotation | homologous IL_8P9A_445 IL_78800.2 | |
| IL_8VFT_238 | 1/9/1412:1413, 1/9/1427:1429 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_8VFT_239 | 1/9/1537:1539, 1/9/1594:1596 | Isolated non-canonical cWW pair | geometric IL_3GM7_003 IL_01003.3 | |
| IL_8VFT_240 | 1/9/1541:1550, 1/9/1582:1592 | No text annotation | ||
| IL_8VFT_241 | 1/9/1550:1558, 1/9/1577:1582 | No text annotation | ||
| IL_8VFT_242 | 1/9/1560:1562, 1/9/1573:1575 | Isolated non-canonical cWW pair | homologous IL_8C3A_468 NA | |
| IL_8VFT_243 | 1/9/1604:1610, 1/9/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_8VFT_244 | 1/9/1700:1702, 1/9/1833:1836 | No text annotation | homologous IL_8P9A_452 IL_18228.1 | |
| IL_8VFT_245 | 1/9/1702:1705, 1/9/1829:1833 | No text annotation | homologous IL_8P9A_453 IL_25873.2 | |
| IL_8VFT_246 | 1/9/1706:1708, 1/9/1826:1828 | Isolated non-canonical cWW pair | homologous IL_8C3A_472 NA | |
| IL_8VFT_247 | 1/9/1708:1711, 1/9/1822:1826 | No text annotation | geometric IL_7LYF_005 NA | |
| IL_8VFT_248 | 1/9/1713:1716, 1/9/1817:1820 | Tandem non-canonical cWW pairs | geometric IL_5LQT_002 IL_15225.2 | |
| IL_8VFT_249 | 1/9/1717:1720, 1/9/1813:1816 | Double sheared | homologous IL_8C3A_475 NA | |
| IL_8VFT_250 | 1/9/1720:1722, 1/9/1812:1813 | Single bulged U | homologous IL_8C3A_476 NA | |
| IL_8VFT_251 | 1/9/1729:1731, 1/9/1803:1805 | Isolated non-canonical cWW pair | homologous IL_8C3A_477 NA | |
| IL_8VFT_252 | 1/9/1733:1736, 1/9/1798:1801 | Double sheared | homologous IL_8C3A_478 NA | |
| IL_8VFT_253 | 1/9/1739:1741, 1/9/1793:1795 | Isolated non-canonical cWW pair | geometric IL_8C3A_477 NA | |
| IL_8VFT_254 | 1/9/1742:1746, 1/9/1788:1792 | Triple sheared | homologous IL_8C3A_480 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8VFT_012 | Single stack bend | ||
| IL_8VFT_042 | Single stack bend | ||
| IL_8VFT_043 | No text annotation | ||
| IL_8VFT_071 | No text annotation | ||
| IL_8VFT_122 | Isolated non-canonical cWW pair | ||
| IL_8VFT_123 | Single stack bend | ||
| IL_8VFT_124 | Single stack bend | ||
| IL_8VFT_194 | Single bulged A | ||
| IL_8VFT_202 | Isolated non-canonical cWW pair | ||
| IL_8VFT_203 | No text annotation | ||
| IL_8VFT_255 | Multiple bulged bases | ||
| IL_8VFT_256 | Single stack bend |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8VFT_001 | 1/5/112:116, 1/5/155:160, 1/5/275:278 | No text annotation | ||
| J3_8VFT_002 | 1/5/196:199, 1/5/215:228, 1/5/240:244 | No text annotation | ||
| J3_8VFT_003 | 1/5/351:367, 1/5/374:379, 1/8/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_8VFT_004 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation | geometric J3_5J7L_036 NA | |
| J3_8VFT_005 | 1/5/380:390, 1/5/401:415, 1/8/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_8VFT_006 | 1/5/451:455, 1/5/701:705, 1/5/1292:1296 | No text annotation | ||
| J3_8VFT_007 | 1/5/1531:1537, 1/5/1622:1624, 1/5/1640:1643 | No text annotation | homologous J3_8P9A_049 J3_46658.1 | |
| J3_8VFT_008 | 1/5/1545:1548, 1/5/1580:1584, 1/5/1609:1614 | No text annotation | homologous J3_8P9A_050 J3_21998.1 | |
| J3_8VFT_009 | 1/5/1726:1727, 1/5/1802:1806, 1/5/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_8VFT_010 | 1/5/1969:1971, 1/5/1995:2005, 1/5/2014:2018 | No text annotation | ||
| J3_8VFT_011 | 1/5/2393:2399, 1/5/2805:2807, 1/5/2819:2822 | No text annotation | homologous J3_8P9A_053 J3_05025.1 | |
| J3_8VFT_012 | 1/5/2402:2405, 1/5/2785:2791, 1/5/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_8VFT_013 | 1/5/2440:2445, 1/5/2515:2519, 1/5/2536:2537 | No text annotation | homologous J3_8C3A_052 NA | |
| J3_8VFT_014 | 1/5/2451:2456, 1/5/2465:2476, 1/5/2501:2508 | No text annotation | homologous J3_8C3A_053 NA | |
| J3_8VFT_015 | 1/5/2551:2555, 1/5/2572:2575, 1/5/2757:2767 | No text annotation | ||
| J3_8VFT_016 | 1/5/2575:2576, 1/5/2585:2589, 1/5/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_8VFT_017 | 1/5/2598:2602, 1/5/2737:2738, 1/5/2742:2747 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_8VFT_018 | 1/5/3937:3939, 1/5/4074:4078, 1/5/4168:4173 | No text annotation | geometric J3_8VTW_006 NA | |
| J3_8VFT_019 | 1/5/4091:4094, 1/5/4114:4129, 1/5/4155:4158 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_8VFT_020 | 1/5/4228:4230, 1/5/4331:4342, 1/5/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_8VFT_021 | 1/5/4241:4243, 1/5/4267:4269, 1/5/4278:4283 | No text annotation | homologous J3_8P9A_062 J3_05327.1 | |
| J3_8VFT_022 | 1/5/4463:4466, 1/5/4491:4493, 1/5/4507:4513 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_8VFT_023 | 1/5/4749:4754, 1/5/4879:4883, 1/5/4936:4951 | No text annotation | ||
| J3_8VFT_024 | 1/5/4970:4975, 1/5/4983:4991, 1/5/5060:5063 | No text annotation | ||
| J3_8VFT_025 | 1/7/9:14, 1/7/65:66, 1/7/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_8VFT_026 | 1/8/44:55, 1/8/62:64, 1/8/95:99 | No text annotation | geometric J3_4WF9_001 J3_47707.1 | |
| J3_8VFT_027 | 1/9/40:41, 1/9/481:487, 1/9/512:514 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_8VFT_028 | 1/9/40:47, 1/9/479:487, 1/9/512:514 | No text annotation | homologous J3_8P9A_069 J3_63856.1 | |
| J3_8VFT_029 | 1/9/682:685, 1/9/917:922, 1/9/1022:1023 | No text annotation | ||
| J3_8VFT_030 | 1/9/682:685, 1/9/917:923, 1/9/1019:1023 | No text annotation | ||
| J3_8VFT_031 | 1/9/816:819, 1/9/829:831, 1/9/843:848 | No text annotation | homologous J3_8P9A_073 J3_97642.2 | |
| J3_8VFT_032 | 1/9/938:941, 1/9/985:993, 1/9/1000:1004 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_8VFT_033 | 1/9/1094:1096, 1/9/1136:1140, 1/9/1147:1151 | No text annotation | ||
| J3_8VFT_034 | 1/9/1218:1221, 1/9/1645:1651, 1/9/1673:1680 | No text annotation | homologous J3_8P9A_076 J3_85722.1 | |
| J3_8VFT_035 | 1/9/1225:1228, 1/9/1530:1532, 1/9/1638:1641 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_8VFT_036 | 1/9/1237:1244, 1/9/1255:1266, 1/9/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_8VFT_037 | 1/9/1272:1277, 1/9/1320:1324, 1/9/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_8VFT_038 | 1/9/1340:1345, 1/9/1384:1389, 1/9/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_8VFT_039 | 1/9/1350:1351, 1/9/1360:1363, 1/9/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_8VFT_040 | 1/9/1391:1395, 1/9/1450:1456, 1/9/1470:1479 | No text annotation | ||
| J3_8VFT_041 | 1/9/1532:1536, 1/9/1597:1604, 1/9/1635:1638 | No text annotation | homologous J3_8P9A_084 J3_03192.1 | |
| J4_8VFT_001 | 1/2/7:10, 1/2/25:27, 1/2/43:49, 1/2/65:66 | tRNA junction | homologous J4_6UFG_001 J4_95067.1 | |
| J4_8VFT_002 | 1/3/7:10, 1/3/25:27, 1/3/43:49, 1/3/65:66 | tRNA junction | homologous J4_5HR6_001 J4_95067.1 | |
| J4_8VFT_003 | 1/5/111:112, 1/5/278:283, 1/5/304:310, 1/5/327:330 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_8VFT_004 | 1/5/196:199, 1/5/215:222, 1/5/226:228, 1/5/240:244 | No text annotation | ||
| J4_8VFT_005 | 1/5/2365:2371, 1/5/2389:2391, 1/5/2824:2829, 1/5/3856:3857 | No text annotation | ||
| J4_8VFT_006 | 1/5/2406:2410, 1/5/2434:2439, 1/5/2538:2539, 1/5/2777:2784 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_8VFT_007 | 1/5/2618:2619, 1/5/2637:2642, 1/5/2692:2698, 1/5/2718:2719 | No text annotation | ||
| J4_8VFT_008 | 1/5/3634:3638, 1/5/3650:3654, 1/5/3690:3694, 1/5/3821:3826 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_8VFT_009 | 1/5/3696:3698, 1/5/3752:3753, 1/5/3771:3780, 1/5/3814:3819 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8VFT_010 | 1/5/4231:4235, 1/5/4289:4291, 1/5/4318:4319, 1/5/4328:4330 | No text annotation | ||
| J4_8VFT_011 | 1/5/4231:4235, 1/5/4289:4293, 1/5/4317:4319, 1/5/4328:4330 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_8VFT_012 | 1/5/4587:4590, 1/5/4620:4621, 1/5/4676:4678, 1/5/4712:4715 | No text annotation | ||
| J4_8VFT_013 | 1/9/98:106, 1/9/355:357, 1/9/405:409, 1/9/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_8VFT_014 | 1/9/671:673, 1/9/1032:1037, 1/9/1078:1089, 1/9/1160:1161 | No text annotation | homologous J4_8C3A_022 NA | |
| J5_8VFT_001 | 1/5/19:21, 1/8/35:42, 1/8/101:106, 1/8/113:114, 1/8/136:138 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_8VFT_002 | 1/5/1335:1340, 1/5/1516:1519, 1/5/1658:1661, 1/5/2288:2290, 1/5/2345:2351 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_8VFT_003 | 1/5/2855:2863, 1/5/2887:2888, 1/5/3613:3614, 1/5/3618:3626, 1/5/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_8VFT_004 | 1/5/3903:3910, 1/5/4392:4400, 1/5/4444:4453, 1/5/4528:4534, 1/5/4552:4557 | No text annotation | ||
| J5_8VFT_005 | 1/5/3920:3923, 1/5/4188:4191, 1/5/4204:4205, 1/5/4227:4228, 1/5/4375:4381 | No text annotation | homologous J5_8C3A_006 NA | |
| J5_8VFT_006 | 1/9/30:34, 1/9/521:527, 1/9/558:563, 1/9/592:596, 1/9/640:644 | No text annotation | ||
| J5_8VFT_007 | 1/9/30:34, 1/9/521:527, 1/9/558:565, 1/9/585:596, 1/9/640:644 | No text annotation | ||
| J5_8VFT_008 | 1/9/53:56, 1/9/89:96, 1/9/434:436, 1/9/457:459, 1/9/470:474 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_8VFT_009 | 1/9/123:129, 1/9/183:185, 1/9/214:215, 1/9/310:312, 1/9/337:341 | No text annotation | ||
| J6_8VFT_001 | 1/5/21:26, 1/5/57:67, 1/5/74:78, 1/5/105:109, 1/5/332:339, 1/8/33:35 | No text annotation | ||
| J6_8VFT_002 | 1/5/1352:1355, 1/5/1384:1388, 1/5/1395:1399, 1/5/1418:1421, 1/5/1464:1466, 1/5/1499:1504 | No text annotation | ||
| J6_8VFT_003 | 1/5/3920:3923, 1/5/4188:4191, 1/5/4204:4205, 1/5/4227:4230, 1/5/4331:4342, 1/5/4370:4381 | No text annotation | ||
| J7_8VFT_001 | 1/5/1666:1671, 1/5/1684:1685, 1/5/1852:1855, 1/5/1879:1884, 1/5/1895:1899, 1/5/2077:2078, 1/5/2278:2283 | No text annotation |
Problematic loops
No problematic loops
Coloring options: