HL_8VFT_017

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAGACCCG

Length

9 nucleotides

Bulged bases

8VFT|1|5|A|966, 8VFT|1|5|C|967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_017 not in the Motif Atlas

Geometric match to HL_5XUZ_001

Geometric discrepancy: 0.0921

The information below is about HL_5XUZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8VFT|1|5|C|962
8VFT|1|5|G|963
8VFT|1|5|A|964
8VFT|1|5|G|965
8VFT|1|5|A|966
8VFT|1|5|C|967
8VFT|1|5|C|968
8VFT|1|5|C|969
8VFT|1|5|G|970

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain E

eL6

Chain F

uL30