HL_8VFT_021

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_021 not in the Motif Atlas

Homologous match to HL_8P9A_128

Geometric discrepancy: 0.1027

The information below is about HL_8P9A_128

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VFT|1|5|U|1389
8VFT|1|5|G|1390
8VFT|1|5|A|1391
8VFT|1|5|A|1392
8VFT|1|5|G|1393
8VFT|1|5|G|1394

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13

Chain Q

eL18

Chain a

uL15

Chain i

eL36