HL_8VFT_027

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGCCGAAACGAUC

Length

13 nucleotides

Bulged bases

8VFT|1|5|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VFT|1|5|G|1760
8VFT|1|5|G|1761
8VFT|1|5|C|1762
8VFT|1|5|C|1763
8VFT|1|5|G|1764
8VFT|1|5|A|1765
8VFT|1|5|A|1766
8VFT|1|5|A|1767
8VFT|1|5|C|1768
8VFT|1|5|G|1769
8VFT|1|5|A|1770
8VFT|1|5|U|1771
8VFT|1|5|C|1772

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain J

uL5

Chain PP

uS19