HL_8VFT_034

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_034 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1742

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8VFT|1|5|A|2376
8VFT|1|5|C|2377
8VFT|1|5|G|2378
8VFT|1|5|A|2379
8VFT|1|5|G|2380
8VFT|1|5|A|2381
8VFT|1|5|A|2382
8VFT|1|5|C|2383
8VFT|1|5|U|2384

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31