HL_8VFT_038

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

8VFT|1|5|U|2530, 8VFT|1|5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_038 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.1416

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VFT|1|5|G|2523
8VFT|1|5|U|2524
8VFT|1|5|U|2525
8VFT|1|5|C|2526
8VFT|1|5|A|2527
8VFT|1|5|G|2528
8VFT|1|5|A|2529
8VFT|1|5|U|2530
8VFT|1|5|C|2531
8VFT|1|5|C|2532

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain X

uL23

Chain g

eL34