HL_8VFT_043

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

8VFT|1|5|U|2707

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_043 not in the Motif Atlas

Geometric match to HL_5XUZ_001

Geometric discrepancy: 0.1488

The information below is about HL_5XUZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8VFT|1|5|G|2705
8VFT|1|5|G|2706
8VFT|1|5|U|2707
8VFT|1|5|U|2708
8VFT|1|5|C|2709
8VFT|1|5|C|2710

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain X

uL23