HL_8VFT_055

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8VFT|1|5|A|3876, 8VFT|1|5|A|3877, 8VFT|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_055 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1019

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8VFT|1|5|G|3873
8VFT|1|5|G|3874
8VFT|1|5|G|3875
8VFT|1|5|A|3876
8VFT|1|5|A|3877
8VFT|1|5|C|3878
8VFT|1|5|G|3879
8VFT|1|5|G|3880
8VFT|1|5|G|3881
8VFT|1|5|C|3882

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13

Chain e

eL32