HL_8VFT_064
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- U(PSU)UGGGUUU(PSU)A
- Length
- 11 nucleotides
- Bulged bases
- 8VFT|1|5|U|4354
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VFT_064 not in the Motif Atlas
- Geometric match to HL_8H1B_001
- Geometric discrepancy: 0.3035
- The information below is about HL_8H1B_001
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_86621.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8VFT|1|5|U|4352
8VFT|1|5|PSU|4353
8VFT|1|5|U|4354
8VFT|1|5|G|4355
8VFT|1|5|G|4356
8VFT|1|5|G|4357
8VFT|1|5|U|4358
8VFT|1|5|U|4359
8VFT|1|5|U|4360
8VFT|1|5|PSU|4361
8VFT|1|5|A|4362
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- eL13
- Chain N
- eL15
- Chain a
- uL15
- Chain i
- eL36
- Chain o
- eL42
Coloring options: