HL_8VFT_065
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGU(PSU)CA(PSU)AG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VFT_065 not in the Motif Atlas
- Homologous match to HL_8P9A_172
- Geometric discrepancy: 0.1264
- The information below is about HL_8P9A_172
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52011.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8VFT|1|5|C|4417
8VFT|1|5|G|4418
8VFT|1|5|U|4419
8VFT|1|5|PSU|4420
8VFT|1|5|C|4421
8VFT|1|5|A|4422
8VFT|1|5|PSU|4423
8VFT|1|5|A|4424
8VFT|1|5|G|4425
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain H
- uL6
- Chain I
- uL16
- Chain m
- eL40
- Chain v
- eEF2
Coloring options: