HL_8VFT_068

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_068 not in the Motif Atlas

Homologous match to HL_8P9A_175

Geometric discrepancy: 0.1009

The information below is about HL_8P9A_175

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VFT|1|5|C|4540
8VFT|1|5|G|4541
8VFT|1|5|U|4542
8VFT|1|5|G|4543
8VFT|1|5|A|4544
8VFT|1|5|G|4545

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain A

uL2