HL_8VFT_071

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8VFT|1|5|G|4694, 8VFT|1|5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_071 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0844

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8VFT|1|5|C|4688
8VFT|1|5|U|4689
8VFT|1|5|G|4690
8VFT|1|5|A|4691
8VFT|1|5|A|4692
8VFT|1|5|C|4693
8VFT|1|5|G|4694
8VFT|1|5|C|4695
8VFT|1|5|C|4696
8VFT|1|5|U|4697
8VFT|1|5|C|4698
8VFT|1|5|U|4699
8VFT|1|5|A|4700
8VFT|1|5|A|4701
8VFT|1|5|G|4702

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40