HL_8VFT_074

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8VFT|1|5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_074 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1226

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8VFT|1|5|G|4975
8VFT|1|5|U|4976
8VFT|1|5|A|4977
8VFT|1|5|G|4978
8VFT|1|5|A|4979
8VFT|1|5|C|4980
8VFT|1|5|G|4981
8VFT|1|5|A|4982
8VFT|1|5|C|4983

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31