HL_8VFT_082

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

8VFT|1|8|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_082 not in the Motif Atlas

Geometric match to HL_7A0S_039

Geometric discrepancy: 0.2623

The information below is about HL_7A0S_039

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8VFT|1|8|G|121
8VFT|1|8|G|122
8VFT|1|8|U|123
8VFT|1|8|U|124
8VFT|1|8|C|125
8VFT|1|8|C|126
8VFT|1|8|U|127
8VFT|1|8|C|128
8VFT|1|8|C|129

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

uL23