HL_8VFT_085

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

8VFT|1|9|U|160, 8VFT|1|9|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_085 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.3709

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8VFT|1|9|G|156
8VFT|1|9|U|157
8VFT|1|9|A|158
8VFT|1|9|A2M|159
8VFT|1|9|U|160
8VFT|1|9|U|161
8VFT|1|9|C|162

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

eS6

Chain YY

eS24