HL_8VFT_086

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_086 not in the Motif Atlas

Geometric match to HL_5BTM_001

Geometric discrepancy: 0.3151

The information below is about HL_5BTM_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VFT|1|9|U|197
8VFT|1|9|U|198
8VFT|1|9|C|199
8VFT|1|9|G|200
8VFT|1|9|C|201
8VFT|1|9|G|202

Current chains

Chain 9

18S rRNA

Nearby chains

Chain II

eS8