HL_8VFT_105
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUUGAUAGCU
- Length
- 10 nucleotides
- Bulged bases
- 8VFT|1|9|U|1300, 8VFT|1|9|G|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VFT_105 not in the Motif Atlas
- Homologous match to HL_8P9A_216
- Geometric discrepancy: 0.3692
- The information below is about HL_8P9A_216
- Detailed Annotation
- GNRA wlth extra near cWW
- Broad Annotation
- GNRA wlth extra near cWW
- Motif group
- HL_98423.3
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8VFT|1|9|A|1295
8VFT|1|9|U|1296
8VFT|1|9|U|1297
8VFT|1|9|G|1298
8VFT|1|9|A|1299
8VFT|1|9|U|1300
8VFT|1|9|A|1301
8VFT|1|9|G|1302
8VFT|1|9|C|1303
8VFT|1|9|U|1304
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain PP
- uS19
- Chain dd
- uS14
- Chain ff
- eS31
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