HL_8VFT_108

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_108 not in the Motif Atlas

Homologous match to HL_8P9A_220

Geometric discrepancy: 0.4094

The information below is about HL_8P9A_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

8VFT|1|9|C|1460
8VFT|1|9|G|1461
8VFT|1|9|U|1462
8VFT|1|9|U|1463
8VFT|1|9|C|1464
8VFT|1|9|A|1465
8VFT|1|9|G|1466

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

uS2

Chain RR

eS17

Chain cc

eS28

Chain gg

RACK1