HL_8VIO_004
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- UAGGAGGCUG
- Length
- 10 nucleotides
- Bulged bases
- 8VIO|1|A|A|57
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VIO_004 not in the Motif Atlas
- Homologous match to HL_4WF9_067
- Geometric discrepancy: 0.5333
- The information below is about HL_4WF9_067
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8VIO|1|A|U|56
8VIO|1|A|A|57
8VIO|1|A|G|58
8VIO|1|A|G|59
8VIO|1|A|A|60
8VIO|1|A|G|61
8VIO|1|A|G|62
8VIO|1|A|C|63
8VIO|1|A|U|64
8VIO|1|A|G|65
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain U
- 50S Ribosomal Protein L23
- Chain Z
- 50S ribosomal protein L29
- Chain d
- 50S ribosomal protein L34
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