HL_8VIO_017
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GGCCCGUGGAAUC
- Length
- 13 nucleotides
- Bulged bases
- 8VIO|1|A|G|474
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VIO_017 not in the Motif Atlas
- Homologous match to HL_4WF9_013
- Geometric discrepancy: 0.2378
- The information below is about HL_4WF9_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69139.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8VIO|1|A|G|469
8VIO|1|A|G|470
8VIO|1|A|C|471
8VIO|1|A|C|472
8VIO|1|A|C|473
8VIO|1|A|G|474
8VIO|1|A|U|475
8VIO|1|A|G|476
8VIO|1|A|G|477
8VIO|1|A|A|478
8VIO|1|A|A|479
8VIO|1|A|U|480
8VIO|1|A|C|481
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain M
- 50S ribosomal protein L15
- Chain Y
- 50S Ribosomal Protein L28
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