HL_8VIO_028

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GGUUGAAGAC

Length

10 nucleotides

Bulged bases

8VIO|1|A|U|862, 8VIO|1|A|G|866, 8VIO|1|A|A|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VIO_028 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.1266

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

8VIO|1|A|G|859
8VIO|1|A|G|860
8VIO|1|A|U|861
8VIO|1|A|U|862
8VIO|1|A|G|863
8VIO|1|A|A|864
8VIO|1|A|A|865
8VIO|1|A|G|866
8VIO|1|A|A|867
8VIO|1|A|C|868

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain T

50S Ribosomal Protein L22

Chain b

50S ribosomal protein L32

Chain d

50S ribosomal protein L34