3D structure

PDB id
8VIO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.26 Å

Loop

Sequence
GAAACAGC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8VIO_033 not in the Motif Atlas
Homologous match to HL_4WF9_028
Geometric discrepancy: 0.1214
The information below is about HL_4WF9_028
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_42998.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

8VIO|1|A|G|1096
8VIO|1|A|A|1097
8VIO|1|A|A|1098
8VIO|1|A|A|1099
8VIO|1|A|C|1100
8VIO|1|A|A|1101
8VIO|1|A|G|1102
8VIO|1|A|C|1103

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L30
Chain 3
50S Ribosomal Protein L37

Coloring options:


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