HL_8VIO_058

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

8VIO|1|A|C|2369

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VIO_058 not in the Motif Atlas

Homologous match to HL_5J7L_184

Geometric discrepancy: 0.435

The information below is about HL_5J7L_184

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79299.1

Basepair signature

cWW-tSW-R

Number of instances in this motif group

44

Unit IDs

8VIO|1|A|C|2366
8VIO|1|A|G|2367
8VIO|1|A|C|2368
8VIO|1|A|C|2369
8VIO|1|A|A|2370
8VIO|1|A|G|2371

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S11