HL_8VIO_059

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GUAUAUCC

Length

8 nucleotides

Bulged bases

8VIO|1|A|U|2437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VIO_059 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.2296

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

8VIO|1|A|G|2432
8VIO|1|A|U|2433
8VIO|1|A|A|2434
8VIO|1|A|U|2435
8VIO|1|A|A|2436
8VIO|1|A|U|2437
8VIO|1|A|C|2438
8VIO|1|A|C|2439

Current chains

Chain A

23S ribosomal RNA

Nearby chains