HL_8VIO_068

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UGGAGCAG

Length

8 nucleotides

Bulged bases

8VIO|1|A|G|2753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VIO_068 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1159

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8VIO|1|A|U|2752
8VIO|1|A|G|2753
8VIO|1|A|G|2754
8VIO|1|A|A|2755
8VIO|1|A|G|2756
8VIO|1|A|C|2757
8VIO|1|A|A|2758
8VIO|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX

Chain G

50S ribosomal protein L6

Chain f

50S ribosomal protein L36