HL_8VIO_069

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VIO_069 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.1174

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8VIO|1|A|C|2775
8VIO|1|A|U|2776
8VIO|1|A|G|2777
8VIO|1|A|U|2778
8VIO|1|A|U|2779
8VIO|1|A|C|2780
8VIO|1|A|G|2781

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX