HL_8VIO_083

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CUUUUG

Length

6 nucleotides

Bulged bases

8VIO|1|a|U|217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VIO_083 not in the Motif Atlas

Geometric match to HL_8P9A_193

Geometric discrepancy: 0.353

The information below is about HL_8P9A_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

8VIO|1|a|C|213
8VIO|1|a|U|214
8VIO|1|a|U|215
8VIO|1|a|U|216
8VIO|1|a|U|217
8VIO|1|a|G|218

Current chains

Chain a

16S ribosomal RNA

Nearby chains