HL_8VIO_105

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VIO_105 not in the Motif Atlas

Homologous match to HL_5J7L_027

Geometric discrepancy: 0.3184

The information below is about HL_5J7L_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VIO|1|a|C|1246
8VIO|1|a|G|1247
8VIO|1|a|U|1248
8VIO|1|a|G|1249
8VIO|1|a|A|1250
8VIO|1|a|G|1251

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S13

Chain y

30S ribosomal protein S19