HL_8VK0_014
3D structure
- PDB id
- 8VK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- GGCCCGUGGAAUC
- Length
- 13 nucleotides
- Bulged bases
- 8VK0|1|A|G|474
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VK0_014 not in the Motif Atlas
- Homologous match to HL_4WF9_013
- Geometric discrepancy: 0.2288
- The information below is about HL_4WF9_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69139.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8VK0|1|A|G|469
8VK0|1|A|G|470
8VK0|1|A|C|471
8VK0|1|A|C|472
8VK0|1|A|C|473
8VK0|1|A|G|474
8VK0|1|A|U|475
8VK0|1|A|G|476
8VK0|1|A|G|477
8VK0|1|A|A|478
8VK0|1|A|A|479
8VK0|1|A|U|480
8VK0|1|A|C|481
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L15
- Chain Y
- 50S Ribosomal Protein L28
Coloring options: