HL_8VK0_057

3D structure

PDB id

8VK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

8VK0|1|A|A|2492, 8VK0|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VK0_057 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0858

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8VK0|1|A|C|2488
8VK0|1|A|U|2489
8VK0|1|A|A|2490
8VK0|1|A|A|2491
8VK0|1|A|A|2492
8VK0|1|A|A|2493
8VK0|1|A|U|2494
8VK0|1|A|G|2495
8VK0|1|A|U|2496
8VK0|1|A|A|2497
8VK0|1|A|A|2498
8VK0|1|A|C|2499
8VK0|1|A|G|2500

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL16

Chain X

50S ribosomal protein L27