HL_8VK0_058

3D structure

PDB id

8VK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GGACGGCAAUC

Length

11 nucleotides

Bulged bases

8VK0|1|A|G|2532, 8VK0|1|A|C|2533, 8VK0|1|A|A|2534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VK0_058 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.4212

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8VK0|1|A|G|2527
8VK0|1|A|G|2528
8VK0|1|A|A|2529
8VK0|1|A|C|2530
8VK0|1|A|G|2531
8VK0|1|A|G|2532
8VK0|1|A|C|2533
8VK0|1|A|A|2534
8VK0|1|A|A|2535
8VK0|1|A|U|2536
8VK0|1|A|C|2537

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S Ribosomal Protein L5