HL_8VK0_065

3D structure

PDB id

8VK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VK0_065 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.1584

The information below is about HL_4WF9_058

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8VK0|1|A|C|2775
8VK0|1|A|U|2776
8VK0|1|A|G|2777
8VK0|1|A|U|2778
8VK0|1|A|U|2779
8VK0|1|A|C|2780
8VK0|1|A|G|2781

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX