HL_8VK7_028

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

8VK7|1|A|U|1075, 8VK7|1|A|G|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VK7_028 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.2746

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8VK7|1|A|G|1072
8VK7|1|A|G|1073
8VK7|1|A|A|1074
8VK7|1|A|U|1075
8VK7|1|A|A|1076
8VK7|1|A|A|1077
8VK7|1|A|G|1078
8VK7|1|A|C|1079

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S Ribosomal Protein L37

Chain N

Large ribosomal subunit protein uL16