RNA 3D Hub //

8VK7 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8VK7_0011/A/56:65No text annotation
homologous
HL_5J7L_134
HL_35677.3
HL_8VK7_0021/A/84:93Pseudoknot geometry
homologous
HL_4WF9_002
HL_77600.2
HL_8VK7_0031/A/120:125No text annotation
homologous
HL_5J7L_136
HL_82710.2
HL_8VK7_0041/A/134:141GNRA wlth tandem sheared
homologous
HL_4WF9_004
HL_81538.2
HL_8VK7_0051/A/157:167No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_8VK7_0061/A/193:200No text annotation
homologous
HL_4WF9_006
HL_30068.2
HL_8VK7_0071/A/224:230No text annotation
homologous
HL_4WF9_007
HL_53890.2
HL_8VK7_0081/A/246:252No text annotation
homologous
HL_4WF9_008
HL_37369.2
HL_8VK7_0091/A/283:303No text annotation
HL_8VK7_0101/A/336:345No text annotation
HL_8VK7_0111/A/387:394T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
HL_01609.3
HL_8VK7_0121/A/409:417T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_8VK7_0131/A/470:480No text annotation
homologous
HL_9DFE_012
HL_91503.7
HL_8VK7_0141/A/498:505Pseudoknot geometry
homologous
HL_4WF9_014
HL_30680.3
HL_8VK7_0151/A/550:555GNRA
homologous
HL_4WF9_015
HL_37824.8
HL_8VK7_0161/A/575:580GNRA
homologous
HL_9DFE_015
HL_37824.8
HL_8VK7_0171/A/634:637No text annotation
geometric
HL_8C3A_054
NA
HL_8VK7_0181/A/658:667T-loop with 2 stacked bulged bases
homologous
HL_9DFE_016
HL_28252.9
HL_8VK7_0191/A/705:710No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_8VK7_0201/A/723:728GNRA
homologous
HL_5J7L_152
HL_37824.8
HL_8VK7_0211/A/735:741GNRA
homologous
HL_4WF9_021
HL_37824.8
HL_8VK7_0221/A/755:760No text annotation
HL_8VK7_0231/A/827:834GNRA wlth tandem sheared
homologous
HL_9DFE_020
HL_81538.2
HL_8VK7_0241/A/859:868No text annotation
homologous
HL_7A0S_022
HL_88205.2
HL_8VK7_0251/A/894:900No text annotation
homologous
HL_5J7L_156
HL_87954.2
HL_8VK7_0261/A/941:946No text annotation
homologous
HL_5J7L_157
HL_55195.3
HL_8VK7_0271/A/1001:1006No text annotation
HL_8VK7_0281/A/1072:1079GNRA
homologous
HL_7A0S_026
HL_37824.8
HL_8VK7_0291/A/1096:1103No text annotation
homologous
HL_5J7L_160
HL_42998.2
HL_8VK7_0301/A/1182:1192No text annotation
homologous
HL_5J7L_161
HL_19210.3
HL_8VK7_0311/A/1210:1217GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_81538.2
HL_8VK7_0321/A/1290:1293No text annotation
HL_8VK7_0331/A/1336:1341GNRA
homologous
HL_7A0S_031
HL_37824.8
HL_8VK7_0341/A/1396:1404T-loop with 2 stacked bulged bases
homologous
HL_4WF9_032
HL_28252.9
HL_8VK7_0351/A/1439:1445Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_8VK7_0361/A/1478:1483GNRA
homologous
HL_5J7L_167
HL_37824.8
HL_8VK7_0371/A/1504:1513No text annotation
homologous
HL_5J7L_168
HL_81545.2
HL_8VK7_0381/A/1671:1682Pseudoknot
homologous
HL_7A0S_036
HL_93135.1
HL_8VK7_0391/A/1711:1719No text annotation
HL_8VK7_0401/A/1753:1760No text annotation
HL_8VK7_0411/A/1785:1788Mini UNCG
homologous
HL_5J7L_172
HL_48778.2
HL_8VK7_0421/A/1830:1837No text annotation
homologous
HL_5J7L_173
HL_89567.2
HL_8VK7_0431/A/1848:1854GNRA
homologous
HL_5J7L_174
HL_37824.8
HL_8VK7_0441/A/1909:1914UNCG
homologous
HL_5J7L_175
HL_34617.5
HL_8VK7_0451/A/1945:1948No text annotation
geometric
HL_5J7L_176
HL_32346.4
HL_8VK7_0461/A/1969:1973No text annotation
homologous
HL_9DFE_042
HL_80709.3
HL_8VK7_0471/A/1994:2004No text annotation
homologous
HL_5J7L_178
HL_01962.2
HL_8VK7_0481/A/2023:2028GNRA
homologous
HL_9DFE_044
HL_37824.8
HL_8VK7_0491/A/2173:2181No text annotation
HL_8VK7_0501/A/2251:2260No text annotation
homologous
HL_5J7L_183
HL_61996.3
HL_8VK7_0511/A/2360:2377No text annotation
HL_8VK7_0521/A/2432:2439No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_8VK7_0531/A/2472:2480No text annotation
homologous
HL_7A0S_052
HL_85367.2
HL_8VK7_0541/A/2488:2500No text annotation
homologous
HL_7A0S_053
HL_91939.2
HL_8VK7_0551/A/2528:2536No text annotation
homologous
HL_5J7L_219
HL_50860.2
HL_8VK7_0561/A/2548:2555Pseudoknot geometry
homologous
HL_4WF9_052
HL_93324.4
HL_8VK7_0571/A/2579:2586GNRA with extra cWW
homologous
HL_4WF9_053
HL_04259.3
HL_8VK7_0581/A/2598:2603GNRA
homologous
HL_5J7L_191
HL_37824.8
HL_8VK7_0591/A/2628:2637No text annotation
homologous
HL_5J7L_192
HL_53454.2
HL_8VK7_0601/A/2695:2703No text annotation
homologous
HL_9DFE_058
HL_32735.2
HL_8VK7_0611/A/2752:2759GNRA variation
homologous
HL_5J7L_194
HL_31585.4
HL_8VK7_0621/A/2775:2781No text annotation
homologous
HL_5J7L_195
HL_30068.2
HL_8VK7_0631/A/2818:2823GNRA
homologous
HL_5J7L_196
HL_37824.8
HL_8VK7_0641/A/2882:2887GNRA
homologous
HL_5J7L_197
HL_37824.8
HL_8VK7_0651/A/2925:2930Ribsomal LSU H95
homologous
HL_7A0S_064
HL_65794.5
HL_8VK7_0661/A/2969:2983No text annotation
homologous
HL_5J7L_199
HL_74055.2
HL_8VK7_0671/A/3019:3023No text annotation
geometric
HL_8VTW_006
NA
HL_8VK7_0681/A/3040:3048No text annotation
homologous
HL_9DFE_065
HL_64690.6
HL_8VK7_0691/A/3077:3082GNRA
homologous
HL_7A0S_068
HL_37824.8
HL_8VK7_0701/B/39:45No text annotation
homologous
HL_4V9F_071
HL_47787.2
HL_8VK7_0711/B/85:90No text annotation
geometric
HL_5HR7_005
HL_50006.3

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8VK7_0011/A/21:27,
1/A/597:603		Triple sheared with non-canonical cWW
homologous
IL_4WF9_001
IL_04021.2
IL_8VK7_0021/A/33:34,
1/A/530:532		Single bulged A
homologous
IL_7A0S_002
IL_31462.7
IL_8VK7_0031/A/40:41,
1/A/522:524		Minor groove platform
homologous
IL_5J7L_247
IL_51454.3
IL_8VK7_0041/A/78:82,
1/A/95:102		Kink-turn
homologous
IL_9DFE_004
IL_01488.3
IL_8VK7_0051/A/182:183,
1/A/211:213		Single stack bend
homologous
IL_5J7L_249
IL_90729.1
IL_8VK7_0061/A/187:193,
1/A/200:207		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_006
IL_04346.10
IL_8VK7_0071/A/239:245,
1/A/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
IL_26307.2
IL_8VK7_0081/A/322:324,
1/A/452:454		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
IL_28037.2
IL_8VK7_0091/A/324:325,
1/A/450:452		Single stack bend
geometric
IL_8C3A_076
NA
IL_8VK7_0101/A/356:364,
1/A/438:439		No text annotation
IL_8VK7_0111/A/369:371,
1/A/432:433		Single bulged U
geometric
IL_4LFB_046
IL_89505.4
IL_8VK7_0121/A/382:384,
1/A/397:398		Single bulged U
geometric
IL_3TZR_002
IL_89505.4
IL_8VK7_0131/A/569:572,
1/A/583:596		No text annotation
geometric
IL_5TBW_014
NA
IL_8VK7_0141/A/623:626,
1/A/646:649		Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_8VK7_0151/A/630:631,
1/A/640:642		Single bulged U
geometric
IL_1S03_005
IL_89505.4
IL_8VK7_0161/A/656:658,
1/A/667:669		Isolated non-canonical cWW pair
homologous
IL_5J7L_257
IL_07785.1
IL_8VK7_0171/A/683:685,
1/A/780:781		Single bulged A
homologous
IL_7A0S_012
IL_31462.7
IL_8VK7_0181/A/699:703,
1/A/712:716		No text annotation
homologous
IL_9DFE_014
IL_66798.2
IL_8VK7_0191/A/787:789,
1/A/921:923		Isolated non-canonical cWW pair
homologous
IL_4WF9_020
IL_87907.2
IL_8VK7_0201/A/789:793,
1/A/914:921		tHW-tHW cross-strand stack
homologous
IL_5J7L_260
IL_54041.2
IL_8VK7_0211/A/812:813,
1/A/878:880		Single bulged A
homologous
IL_5J7L_261
IL_31462.7
IL_8VK7_0221/A/817:818,
1/A/843:845		Single bulged G
homologous
IL_5J7L_262
IL_00225.14
IL_8VK7_0231/A/818:822,
1/A/839:843		Triple sheared
homologous
IL_9DFE_019
IL_50730.2
IL_8VK7_0241/A/853:855,
1/A/872:873		Major groove platform
homologous
IL_5J7L_264
IL_48076.6
IL_8VK7_0251/A/890:892,
1/A/902:906		Multiple bulged bases
geometric
IL_5J7L_265
IL_06549.2
IL_8VK7_0261/A/952:953,
1/A/1057:1059		Single stack bend
homologous
IL_7A0S_022
IL_90729.1
IL_8VK7_0271/A/959:961,
1/A/1048:1051		Isolated cWH basepair
geometric
IL_8VTW_024
NA
IL_8VK7_0281/A/959:964,
1/A/1043:1051		No text annotation
IL_8VK7_0291/A/961:964,
1/A/1043:1048		No text annotation
IL_8VK7_0301/A/971:977,
1/A/1030:1036		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
IL_29198.2
IL_8VK7_0311/A/977:978,
1/A/1028:1030		Minor groove platform
homologous
IL_4WF9_032
IL_51454.3
IL_8VK7_0321/A/979:984,
1/A/1024:1027		C-loop with bulged stacked A's
homologous
IL_9DFE_028
IL_26222.2
IL_8VK7_0331/A/986:988,
1/A/1020:1022		Isolated cWS basepair
homologous
IL_4WF9_034
NA
IL_8VK7_0341/A/991:998,
1/A/1009:1017		No text annotation
IL_8VK7_0351/A/1066:1067,
1/A/1084:1086		Single bulged G
geometric
IL_4LVW_002
IL_00225.14
IL_8VK7_0361/A/1112:1114,
1/A/1278:1279		Single bulged C
homologous
IL_5J7L_276
IL_61258.15
IL_8VK7_0371/A/1116:1120,
1/A/1272:1276		UAA/GAN
homologous
IL_4WF9_036
IL_38507.2
IL_8VK7_0381/A/1122:1129,
1/A/1269:1270		SSU/LSU pseudoknot
homologous
IL_9DFE_036
IL_41203.4
IL_8VK7_0391/A/1129:1131,
1/A/1268:1269		Single bulged U
homologous
IL_4WF9_038
IL_89505.4
IL_8VK7_0401/A/1136:1142,
1/A/1258:1263		Kink-turn related
homologous
IL_5J7L_280
IL_57188.5
IL_8VK7_0411/A/1142:1148,
1/A/1242:1258		No text annotation
homologous
IL_5J7L_281
IL_50715.3
IL_8VK7_0421/A/1149:1152,
1/A/1239:1241		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
IL_57744.1
IL_8VK7_0431/A/1161:1169,
1/A/1226:1230		Kink-turn
homologous
IL_5J7L_284
IL_99692.2
IL_8VK7_0441/A/1205:1209,
1/A/1218:1220		No text annotation
homologous
IL_9DFE_043
NA
IL_8VK7_0451/A/1311:1313,
1/A/1362:1365		Isolated cWS basepair
homologous
IL_7A0S_041
IL_42997.3
IL_8VK7_0461/A/1322:1329,
1/A/1349:1353		Kink-turn
homologous
IL_5J7L_288
IL_70923.9
IL_8VK7_0471/A/1333:1334,
1/A/1343:1345		Single bulged A
geometric
IL_2VPL_002
IL_31462.7
IL_8VK7_0481/A/1377:1384,
1/A/2235:2241		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_8VK7_0491/A/1425:1428,
1/A/1821:1822		Major groove platform; stack outside cWW
geometric
IL_4V9F_050
IL_50694.7
IL_8VK7_0501/A/1434:1438,
1/A/1446:1448		Major groove minor groove platform with tHH
homologous
IL_4WF9_050
IL_83150.2
IL_8VK7_0511/A/1466:1468,
1/A/1494:1495		Single stack bend
geometric
IL_7A0S_005
IL_90729.1
IL_8VK7_0521/A/1466:1470,
1/A/1491:1495		UAA/GAN
geometric
IL_7A0S_048
IL_89021.2
IL_8VK7_0531/A/1468:1470,
1/A/1491:1494		No text annotation
IL_8VK7_0541/A/1472:1476,
1/A/1485:1489		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_8VK7_0551/A/1529:1531,
1/A/1804:1806		Isolated non-canonical cWW pair
geometric
IL_7VFT_004
NA
IL_8VK7_0561/A/1538:1545,
1/A/1625:1634		No text annotation
IL_8VK7_0571/A/1638:1642,
1/A/1797:1800		Other IL
homologous
IL_4WF9_054
IL_99646.2
IL_8VK7_0581/A/1653:1656,
1/A/1777:1781		tWW and near cWH
geometric
IL_6DLR_005
IL_04785.1
IL_8VK7_0591/A/1658:1661,
1/A/1771:1775		No text annotation
homologous
IL_9DFE_056
IL_99646.2
IL_8VK7_0601/A/1689:1692,
1/A/1742:1746		No text annotation
homologous
IL_5J7L_299
IL_68574.4
IL_8VK7_0611/A/1694:1699,
1/A/1735:1740		No text annotation
IL_8VK7_0621/A/1702:1703,
1/A/1726:1732		No text annotation
homologous
IL_9DFE_060
IL_46086.1
IL_8VK7_0631/A/1709:1711,
1/A/1719:1720		No text annotation
IL_8VK7_0641/A/1869:1874,
1/A/2228:2230		No text annotation
IL_8VK7_0651/A/1881:1883,
1/A/2219:2221		Isolated tWW turn
homologous
IL_7A0S_060
IL_67095.2
IL_8VK7_0661/A/1884:1887,
1/A/2217:2218		Major groove platform; stack outside cWW
geometric
IL_4WF9_064
IL_50694.7
IL_8VK7_0671/A/1884:1892,
1/A/2214:2218		No text annotation
geometric
IL_4WF9_117
IL_22854.4
IL_8VK7_0681/A/1887:1892,
1/A/2214:2217		Intercalated tWH
homologous
IL_4WF9_065
IL_76758.2
IL_8VK7_0691/A/1904:1909,
1/A/1914:1920		No text annotation
homologous
IL_9DFE_068
IL_47346.2
IL_8VK7_0701/A/1930:1934,
1/A/1960:1963		tWW and near cWH
geometric
IL_6DLR_005
IL_04785.1
IL_8VK7_0711/A/1937:1942,
1/A/1952:1957		No text annotation
geometric
IL_8ZA4_001
IL_76308.6
IL_8VK7_0721/A/1944:1945,
1/A/1948:1950		Single bulged C
geometric
IL_5J7L_311
IL_61258.15
IL_8VK7_0731/A/1987:1988,
1/A/2204:2206		Single bulged A
homologous
IL_9DFE_069
IL_31462.7
IL_8VK7_0741/A/2015:2021,
1/A/2030:2038		Kink-turn related
homologous
IL_5J7L_313
IL_17069.5
IL_8VK7_0751/A/2274:2276,
1/A/2841:2842		Major groove platform
homologous
IL_9DFE_078
IL_48076.6
IL_8VK7_0761/A/2278:2280,
1/A/2836:2839		No text annotation
homologous
IL_4WF9_079
IL_83389.2
IL_8VK7_0771/A/2293:2294,
1/A/2662:2665		Minor groove platform
homologous
IL_9DFE_081
IL_51454.3
IL_8VK7_0781/A/2304:2306,
1/A/2460:2463		No text annotation
homologous
IL_9DFE_082
IL_85599.2
IL_8VK7_0791/A/2308:2310,
1/A/2456:2458		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
IL_28037.2
IL_8VK7_0801/A/2317:2319,
1/A/2416:2418		Isolated non-canonical cWW pair
geometric
IL_7MLW_001
IL_87907.2
IL_8VK7_0811/A/2329:2346,
1/A/2398:2406		No text annotation
IL_8VK7_0821/A/2347:2351,
1/A/2383:2397		Kink-turn related
homologous
IL_5J7L_329
IL_87290.1
IL_8VK7_0831/A/2352:2359,
1/A/2378:2382		Kink-turn
homologous
IL_5J7L_330
IL_70923.9
IL_8VK7_0841/A/2425:2427,
1/A/2444:2445		Single bulged U
homologous
IL_5J7L_331
IL_89505.4
IL_8VK7_0851/A/2521:2523,
1/A/2541:2545		No text annotation
homologous
IL_9DFE_088
IL_61476.2
IL_8VK7_0861/A/2574:2577,
1/A/2588:2591		Double sheared
homologous
IL_5J7L_333
IL_09705.15
IL_8VK7_0871/A/2625:2627,
1/A/2638:2639		Single bulged U
homologous
IL_5J7L_334
IL_89505.4
IL_8VK7_0881/A/2677:2678,
1/A/2722:2724		Single stack bend
homologous
IL_4WF9_089
IL_26793.1
IL_8VK7_0891/A/2678:2679,
1/A/2720:2722		Major groove platform
homologous
IL_5J7L_392
IL_48076.6
IL_8VK7_0901/A/2681:2683,
1/A/2717:2718		Major groove platform
homologous
IL_9DFE_093
IL_48076.6
IL_8VK7_0911/A/2683:2685,
1/A/2713:2717		Major groove minor groove platform with extra cWW
homologous
IL_4WF9_092
IL_51387.3
IL_8VK7_0921/A/2685:2687,
1/A/2711:2713		Isolated non-canonical cWW pair
geometric
IL_3SZX_001
IL_87907.2
IL_8VK7_0931/A/2690:2694,
1/A/2704:2708		Double sheared with non-canonical cWW
homologous
IL_7A0S_087
IL_17948.2
IL_8VK7_0941/A/2731:2732,
1/A/2804:2806		No text annotation
homologous
IL_9DFE_096
IL_07039.3
IL_8VK7_0951/A/2734:2736,
1/A/2798:2802		Isolated non-canonical cWW with bulges
homologous
IL_9DFE_097
IL_07785.1
IL_8VK7_0961/A/2736:2737,
1/A/2795:2798		No text annotation
homologous
IL_5J7L_341
IL_42626.2
IL_8VK7_0971/A/2746:2747,
1/A/2764:2767		Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_8VK7_0981/A/2815:2816,
1/A/2825:2827		Single bulged A
homologous
IL_5J7L_344
IL_31462.7
IL_8VK7_0991/A/2860:2864,
1/A/2998:3006		tSH-tHS-tHW
homologous
IL_5J7L_345
IL_04638.3
IL_8VK7_1001/A/2876:2882,
1/A/2887:2892		Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7A0S_094
IL_16458.4
IL_8VK7_1011/A/2904:2908,
1/A/2949:2951		C-loop
homologous
IL_5J7L_347
IL_63596.11
IL_8VK7_1021/A/2911:2915,
1/A/2942:2946		UAA/GAN related, with intercalation
homologous
IL_4WF9_102
IL_23774.1
IL_8VK7_1031/A/2919:2920,
1/A/2935:2938		Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_8VK7_1041/A/2961:2966,
1/A/2986:2991		UAA/GAN with extra cWW
homologous
IL_5J7L_350
IL_49767.8
IL_8VK7_1051/A/3059:3061,
1/A/3098:3101		Isolated non-canonical cWW with bulges
geometric
IL_5ML7_010
IL_07785.1
IL_8VK7_1061/A/3064:3066,
1/A/3092:3095		Decoding loop related
homologous
IL_7A0S_100
IL_31531.3
IL_8VK7_1071/A/3068:3073,
1/A/3086:3090		tHS double platform
homologous
IL_4WF9_108
IL_70411.2
IL_8VK7_1081/B/18:19,
1/B/66:68		Major groove intercalation
homologous
IL_4V9F_101
IL_31462.7
IL_8VK7_1091/B/24:34,
1/B/50:61		No text annotation
IL_8VK7_1101/B/35:39,
1/B/45:49		No text annotation
homologous
IL_9DFE_113
IL_58103.11
IL_8VK7_1111/B/72:80,
1/B/95:103		Bacterial 5S Loop E
homologous
IL_5J7L_359
IL_56455.6

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8VK7_0011/A/27:28,
1/A/562:569,
1/A/596:597		No text annotation
geometric
J3_5J7L_036
J3_60031.2
J3_8VK7_0021/A/27:28,
1/A/562:572,
1/A/583:597		No text annotation
homologous
J3_5J7L_066
J3_92134.2
J3_8VK7_0031/A/29:32,
1/A/533:549,
1/A/556:561		No text annotation
homologous
J3_9DFE_003
J3_30040.2
J3_8VK7_0041/A/53:54,
1/A/67:73,
1/A/107:111		No text annotation
homologous
J3_5J7L_037
J3_35667.2
J3_8VK7_0051/A/317:319,
1/A/457:463,
1/A/487:492		No text annotation
J3_8VK7_0061/A/325:331,
1/A/350:352,
1/A/443:450		No text annotation
J3_8VK7_0071/A/374:382,
1/A/398:407,
1/A/419:429		No text annotation
J3_8VK7_0081/A/798:804,
1/A/888:890,
1/A/906:909		No text annotation
homologous
J3_5J7L_038
J3_64189.2
J3_8VK7_0091/A/813:815,
1/A/847:851,
1/A/875:878		No text annotation
homologous
J3_9DFE_008
J3_44724.7
J3_8VK7_0101/A/1173:1180,
1/A/1194:1205,
1/A/1220:1222		No text annotation
J3_8VK7_0111/A/1413:1418,
1/A/1843:1845,
1/A/1857:1860		No text annotation
homologous
J3_5J7L_041
J3_32852.6
J3_8VK7_0121/A/1421:1424,
1/A/1823:1829,
1/A/1838:1840		No text annotation
homologous
J3_9DFE_011
J3_71677.1
J3_8VK7_0131/A/1459:1465,
1/A/1496:1500,
1/A/1517:1518		No text annotation
homologous
J3_7A0S_018
J3_31965.2
J3_8VK7_0141/A/1531:1538,
1/A/1634:1637,
1/A/1801:1804		No text annotation
J3_8VK7_0151/A/1646:1650,
1/A/1784:1785,
1/A/1788:1793		No text annotation
geometric
J3_4V9F_017
J3_12393.2
J3_8VK7_0161/A/2314:2316,
1/A/2419:2423,
1/A/2447:2452		Kink-turn 3-way junction
homologous
J3_5J7L_044
J3_89368.5
J3_8VK7_0171/A/2506:2508,
1/A/2608:2619,
1/A/2645:2651		No text annotation
homologous
J3_5J7L_070
J3_20992.1
J3_8VK7_0181/A/2519:2521,
1/A/2545:2547,
1/A/2556:2561		No text annotation
homologous
J3_4WF9_008
J3_61124.2
J3_8VK7_0191/A/2741:2744,
1/A/2769:2771,
1/A/2785:2791		No text annotation
homologous
J3_4WF9_009
J3_32601.5
J3_8VK7_0201/A/3035:3037,
1/A/3051:3057,
1/A/3103:3107		No text annotation
J3_8VK7_0211/B/11:17,
1/B/69:71,
1/B/104:107		No text annotation
J4_8VK7_0011/A/269:274,
1/A/312:317,
1/A/492:494,
1/A/509:512		No text annotation
J4_8VK7_0021/A/1385:1391,
1/A/1409:1410,
1/A/1863:1866,
1/A/2233:2234		No text annotation
homologous
J4_5J7L_021
J4_64571.5
J4_8VK7_0031/A/1425:1429,
1/A/1453:1458,
1/A/1519:1520,
1/A/1815:1822		No text annotation
homologous
J4_4WF9_005
J4_69051.6
J4_8VK7_0041/A/1428:1429,
1/A/1453:1458,
1/A/1519:1520,
1/A/1815:1821		No text annotation
homologous
J4_4WF9_006
J4_10313.5
J4_8VK7_0051/A/1664:1667,
1/A/1686:1688,
1/A/1747:1751,
1/A/1762:1768		No text annotation
J4_8VK7_0061/A/1989:1993,
1/A/2005:2009,
1/A/2044:2047,
1/A/2199:2203		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_8VK7_0071/A/2509:2513,
1/A/2567:2571,
1/A/2594:2596,
1/A/2605:2607		No text annotation
homologous
J4_9DFE_009
J4_04930.6
J4_8VK7_0081/A/2867:2870,
1/A/2898:2900,
1/A/2955:2959,
1/A/2993:2995		No text annotation
homologous
J4_5J7L_028
J4_77044.4
J5_8VK7_0011/A/44:51,
1/A/113:118,
1/A/127:128,
1/A/147:149,
1/A/175:177		No text annotation
homologous
J5_9DFE_001
J5_01737.2
J5_8VK7_0021/A/618:620,
1/A/652:656,
1/A/669:671,
1/A/1376:1377,
1/A/2241:2242		No text annotation
homologous
J5_9DFE_003
J5_43153.5
J5_8VK7_0031/A/676:681,
1/A/783:786,
1/A/924:927,
1/A/1310:1311,
1/A/1365:1371		No text annotation
homologous
J5_4WF9_004
J5_74302.5
J5_8VK7_0041/A/694:697,
1/A/718:722,
1/A/729:732,
1/A/744:749,
1/A/766:771		No text annotation
J5_8VK7_0051/A/1892:1900,
1/A/1924:1925,
1/A/1968:1969,
1/A/1973:1981,
1/A/2212:2214		No text annotation
homologous
J5_5J7L_016
J5_62523.6
J5_8VK7_0061/A/2281:2288,
1/A/2670:2677,
1/A/2724:2730,
1/A/2807:2812,
1/A/2830:2835		No text annotation
J5_8VK7_0071/A/2297:2300,
1/A/2467:2470,
1/A/2482:2483,
1/A/2505:2506,
1/A/2651:2659		No text annotation
homologous
J5_4WF9_007
J5_39529.1
J6_8VK7_0011/A/42:43,
1/A/178:182,
1/A/213:223,
1/A/231:235,
1/A/262:267,
1/A/514:521		No text annotation
J6_8VK7_0021/A/2297:2300,
1/A/2467:2470,
1/A/2482:2483,
1/A/2505:2508,
1/A/2608:2619,
1/A/2645:2659		No text annotation
J7_8VK7_0011/A/932:937,
1/A/950:951,
1/A/1060:1063,
1/A/1089:1094,
1/A/1105:1109,
1/A/1282:1283,
1/A/1300:1305		No text annotation
J8_8VK7_0011/A/5:12,
1/A/612:618,
1/A/2242:2247,
1/A/2264:2267,
1/A/2849:2854,
1/A/3012:3015,
1/A/3027:3032,
1/A/3110:3115		No text annotation

Problematic loops

No problematic loops


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