HL_8VK7_037

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

8VK7|1|A|U|1511, 8VK7|1|A|U|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VK7_037 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1734

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VK7|1|A|G|1504
8VK7|1|A|U|1505
8VK7|1|A|U|1506
8VK7|1|A|G|1507
8VK7|1|A|A|1508
8VK7|1|A|U|1509
8VK7|1|A|A|1510
8VK7|1|A|U|1511
8VK7|1|A|U|1512
8VK7|1|A|C|1513

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23