HL_8VK7_038

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UCAGUGGUAAUA

Length

12 nucleotides

Bulged bases

8VK7|1|A|A|1673, 8VK7|1|A|G|1674, 8VK7|1|A|U|1675, 8VK7|1|A|U|1681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VK7_038 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5956

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_93135.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8VK7|1|A|U|1671
8VK7|1|A|C|1672
8VK7|1|A|A|1673
8VK7|1|A|G|1674
8VK7|1|A|U|1675
8VK7|1|A|G|1676
8VK7|1|A|G|1677
8VK7|1|A|U|1678
8VK7|1|A|A|1679
8VK7|1|A|A|1680
8VK7|1|A|U|1681
8VK7|1|A|A|1682

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L17