HL_8VKI_006

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8VKI|1|A|A|195, 8VKI|1|A|A|198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKI_006 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.0873

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8VKI|1|A|G|193
8VKI|1|A|A|194
8VKI|1|A|A|195
8VKI|1|A|A|196
8VKI|1|A|C|197
8VKI|1|A|A|198
8VKI|1|A|U|199
8VKI|1|A|C|200

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain Y

50S Ribosomal Protein L28