HL_8VKI_013

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

8VKI|1|A|G|411, 8VKI|1|A|A|412, 8VKI|1|A|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKI_013 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.2093

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8VKI|1|A|G|409
8VKI|1|A|U|410
8VKI|1|A|G|411
8VKI|1|A|A|412
8VKI|1|A|G|413
8VKI|1|A|A|414
8VKI|1|A|G|415
8VKI|1|A|C|416
8VKI|1|A|C|417

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S Ribosomal Protein L4

Chain V

50S ribosomal protein L24