HL_8VKI_022

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

8VKI|1|A|U|739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKI_022 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.2203

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8VKI|1|A|U|735
8VKI|1|A|G|736
8VKI|1|A|A|737
8VKI|1|A|A|738
8VKI|1|A|U|739
8VKI|1|A|A|740
8VKI|1|A|G|741

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain c

50S Ribosomal Protein L33

Chain e

50S ribosomal protein L35