HL_8VKI_025
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GGUUGAAGAC
- Length
- 10 nucleotides
- Bulged bases
- 8VKI|1|A|U|862, 8VKI|1|A|G|866, 8VKI|1|A|A|867
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VKI_025 not in the Motif Atlas
- Homologous match to HL_7A0S_022
- Geometric discrepancy: 0.1345
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8VKI|1|A|G|859
8VKI|1|A|G|860
8VKI|1|A|U|861
8VKI|1|A|U|862
8VKI|1|A|G|863
8VKI|1|A|A|864
8VKI|1|A|A|865
8VKI|1|A|G|866
8VKI|1|A|A|867
8VKI|1|A|C|868
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain T
- 50S Ribosomal Protein L22
- Chain b
- 50S ribosomal protein L32
- Chain d
- 50S ribosomal protein L34
Coloring options: