HL_8VKI_054

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

8VKI|1|A|A|2492, 8VKI|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKI_054 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0839

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8VKI|1|A|C|2488
8VKI|1|A|U|2489
8VKI|1|A|A|2490
8VKI|1|A|A|2491
8VKI|1|A|A|2492
8VKI|1|A|A|2493
8VKI|1|A|U|2494
8VKI|1|A|G|2495
8VKI|1|A|U|2496
8VKI|1|A|A|2497
8VKI|1|A|A|2498
8VKI|1|A|C|2499
8VKI|1|A|G|2500

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL16

Chain X

50S ribosomal protein L27