HL_8VKI_059
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UGAGUGGAAG
- Length
- 10 nucleotides
- Bulged bases
- 8VKI|1|A|A|2630
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VKI_059 not in the Motif Atlas
- Homologous match to HL_5J7L_192
- Geometric discrepancy: 0.108
- The information below is about HL_5J7L_192
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53454.2
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8VKI|1|A|U|2628
8VKI|1|A|G|2629
8VKI|1|A|A|2630
8VKI|1|A|G|2631
8VKI|1|A|U|2632
8VKI|1|A|G|2633
8VKI|1|A|G|2634
8VKI|1|A|A|2635
8VKI|1|A|A|2636
8VKI|1|A|G|2637
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L15
Coloring options: