HL_8VKI_066
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 8VKI|1|A|G|2975, 8VKI|1|A|C|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VKI_066 not in the Motif Atlas
- Homologous match to HL_5J7L_199
- Geometric discrepancy: 0.1569
- The information below is about HL_5J7L_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_74055.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
8VKI|1|A|C|2969
8VKI|1|A|U|2970
8VKI|1|A|G|2971
8VKI|1|A|A|2972
8VKI|1|A|A|2973
8VKI|1|A|A|2974
8VKI|1|A|G|2975
8VKI|1|A|C|2976
8VKI|1|A|A|2977
8VKI|1|A|U|2978
8VKI|1|A|C|2979
8VKI|1|A|U|2980
8VKI|1|A|A|2981
8VKI|1|A|A|2982
8VKI|1|A|G|2983
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L6
- Chain K
- 50S Ribosomal Protein L13
- Chain f
- 50S ribosomal protein L36
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