HL_8VKI_072
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CAUCCG
- Length
- 6 nucleotides
- Bulged bases
- 8VKI|1|B|U|87, 8VKI|1|B|C|88
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VKI_072 not in the Motif Atlas
- Geometric match to HL_2CZJ_007
- Geometric discrepancy: 0.2626
- The information below is about HL_2CZJ_007
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_23696.2
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 8
Unit IDs
8VKI|1|B|C|85
8VKI|1|B|A|86
8VKI|1|B|U|87
8VKI|1|B|C|88
8VKI|1|B|C|89
8VKI|1|B|G|90
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain 3
- 50S Ribosomal Protein L37
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- Large ribosomal subunit protein uL16
- Chain W
- 50S ribosomal protein L25
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