HL_8VKV_007

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUGAUCAUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKV_007 not in the Motif Atlas

Geometric match to HL_8CRE_191

Geometric discrepancy: 0.1606

The information below is about HL_8CRE_191

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VKV|1|D|U|12
8VKV|1|D|U|13
8VKV|1|D|U|14
8VKV|1|D|G|15
8VKV|1|D|A|16
8VKV|1|D|U|17
8VKV|1|D|C|18
8VKV|1|D|A|19
8VKV|1|D|U|20
8VKV|1|D|G|21
8VKV|1|D|G|22

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with a 33 nt long spacer

Chain K

30S ribosomal protein S5

Chain R

30S ribosomal protein S12