8VKV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8VKV_012 | 1/D/259:267 | GNRA related | geometric HL_5J7L_006 NA | |
| HL_8VKV_033 | 1/D/1356:1366 | No text annotation | geometric HL_4LFB_030 HL_86432.1 | |
| HL_8VKV_035 | 1/a/59:68 | No text annotation | geometric HL_5J7L_134 NA | |
| HL_8VKV_036 | 1/a/87:95 | No text annotation | geometric HL_5J7L_135 NA | |
| HL_8VKV_037 | 1/a/123:128 | No text annotation | geometric HL_5J7L_136 NA | |
| HL_8VKV_039 | 1/a/158:168 | No text annotation | geometric HL_5J7L_138 NA | |
| HL_8VKV_040 | 1/a/194:201 | No text annotation | geometric HL_5J7L_139 NA | |
| HL_8VKV_041 | 1/a/225:230 | No text annotation | geometric HL_5J7L_140 NA | |
| HL_8VKV_042 | 1/a/246:252 | No text annotation | geometric HL_5J7L_141 NA | |
| HL_8VKV_043 | 1/a/305:312 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_142 NA | |
| HL_8VKV_044 | 1/a/319:323 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_8VKV_046 | 1/a/382:392 | No text annotation | geometric HL_5J7L_145 NA | |
| HL_8VKV_047 | 1/a/410:417 | Pseudoknot geometry | geometric HL_7A0S_014 HL_30680.5 | |
| HL_8VKV_048 | 1/a/462:467 | GNRA | geometric HL_5J7L_147 NA | |
| HL_8VKV_049 | 1/a/487:493 | GNRA | geometric HL_5J7L_148 NA | |
| HL_8VKV_051 | 1/a/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 NA | |
| HL_8VKV_052 | 1/a/611:617 | No text annotation | ||
| HL_8VKV_053 | 1/a/629:634 | GNRA | geometric HL_5J7L_152 NA | |
| HL_8VKV_054 | 1/a/641:647 | No text annotation | geometric HL_5J7L_153 NA | |
| HL_8VKV_055 | 1/a/712:719 | GNRA wlth tandem sheared | geometric HL_5J7L_154 NA | |
| HL_8VKV_056 | 1/a/779:785 | No text annotation | geometric HL_5J7L_156 NA | |
| HL_8VKV_057 | 1/a/826:831 | No text annotation | geometric HL_5J7L_157 NA | |
| HL_8VKV_059 | 1/a/978:985 | No text annotation | geometric HL_5J7L_160 NA | |
| HL_8VKV_063 | 1/a/1222:1227 | GNRA | geometric HL_5J7L_164 NA | |
| HL_8VKV_064 | 1/a/1281:1289 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_165 NA | |
| HL_8VKV_065 | 1/a/1324:1330 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_166 NA | |
| HL_8VKV_066 | 1/a/1363:1368 | GNRA | geometric HL_5J7L_167 NA | |
| HL_8VKV_067 | 1/a/1389:1398 | No text annotation | geometric HL_5J7L_168 NA | |
| HL_8VKV_068 | 1/a/1451:1459 | Mini UNCG with extended bulge | geometric HL_5J7L_169 NA | |
| HL_8VKV_069 | 1/a/1492:1498 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_170 NA | |
| HL_8VKV_071 | 1/a/1565:1568 | Mini UNCG | geometric HL_5J7L_172 NA | |
| HL_8VKV_072 | 1/a/1630:1636 | GNRA | geometric HL_5J7L_174 NA | |
| HL_8VKV_073 | 1/a/1691:1696 | UNCG | geometric HL_5J7L_175 NA | |
| HL_8VKV_075 | 1/a/1752:1756 | No text annotation | geometric HL_5J7L_177 NA | |
| HL_8VKV_076 | 1/a/1777:1787 | No text annotation | geometric HL_5J7L_178 NA | |
| HL_8VKV_077 | 1/a/1806:1811 | GNRA related | geometric HL_3OXE_002 HL_37569.2 | |
| HL_8VKV_078 | 1/a/1868:1873 | GNRA variation | geometric HL_5J7L_180 NA | |
| HL_8VKV_079 | 1/a/1949:1957 | No text annotation | geometric HL_5J7L_182 NA | |
| HL_8VKV_081 | 1/a/2209:2215 | No text annotation | geometric HL_5J7L_185 NA | |
| HL_8VKV_082 | 1/a/2264:2276 | No text annotation | geometric HL_5J7L_187 NA | |
| HL_8VKV_083 | 1/a/2304:2312 | No text annotation | geometric HL_5J7L_219 NA | |
| HL_8VKV_084 | 1/a/2324:2331 | Pseudoknot geometry | geometric HL_5J7L_189 NA | |
| HL_8VKV_085 | 1/a/2356:2361 | GNRA | geometric HL_5J7L_190 NA | |
| HL_8VKV_086 | 1/a/2374:2379 | GNRA | geometric HL_9DFE_018 HL_34789.2 | |
| HL_8VKV_087 | 1/a/2404:2413 | No text annotation | geometric HL_5J7L_192 NA | |
| HL_8VKV_088 | 1/a/2471:2479 | No text annotation | geometric HL_5J7L_193 NA | |
| HL_8VKV_089 | 1/a/2528:2535 | GNRA variation | geometric HL_5J7L_194 NA | |
| HL_8VKV_090 | 1/a/2594:2599 | GNRA | geometric HL_4V9F_065 HL_34789.2 | |
| HL_8VKV_091 | 1/a/2658:2663 | GNRA | geometric HL_4V9F_066 HL_34789.2 | |
| HL_8VKV_092 | 1/a/2701:2706 | Ribsomal LSU H95 | geometric HL_5J7L_198 NA | |
| HL_8VKV_093 | 1/a/2745:2759 | No text annotation | geometric HL_4WF9_062 HL_53269.2 | |
| HL_8VKV_094 | 1/a/2795:2801 | UNCG variation | geometric HL_5J7L_200 NA | |
| HL_8VKV_095 | 1/a/2819:2827 | No text annotation | geometric HL_5J7L_201 NA | |
| HL_8VKV_096 | 1/a/2856:2861 | GNRA | geometric HL_9DFE_018 HL_34789.2 | |
| HL_8VKV_097 | 1/d/34:48 | No text annotation | geometric HL_5J7L_215 NA | |
| HL_8VKV_098 | 1/d/38:44 | No text annotation | geometric HL_5J7L_203 NA | |
| HL_8VKV_099 | 1/d/86:90 | Mini UNCG | geometric HL_8P9A_151 HL_90436.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8VKV_001 | No text annotation | ||
| HL_8VKV_002 | No text annotation | ||
| HL_8VKV_003 | T-loop with 2 stacked bulged bases | ||
| HL_8VKV_004 | No text annotation | ||
| HL_8VKV_005 | No text annotation | ||
| HL_8VKV_006 | T-loop with 2 stacked bulged bases | ||
| HL_8VKV_007 | No text annotation | ||
| HL_8VKV_008 | No text annotation | ||
| HL_8VKV_009 | GNRA | ||
| HL_8VKV_010 | GNRA | ||
| HL_8VKV_011 | No text annotation | ||
| HL_8VKV_013 | GNRA | ||
| HL_8VKV_014 | No text annotation | ||
| HL_8VKV_015 | UNCG | ||
| HL_8VKV_016 | GNRA | ||
| HL_8VKV_017 | UNCG | ||
| HL_8VKV_018 | GNRA wlth extra near cWW | ||
| HL_8VKV_019 | GNRA-like with tWH | ||
| HL_8VKV_020 | No text annotation | ||
| HL_8VKV_021 | GNRA | ||
| HL_8VKV_022 | No text annotation | ||
| HL_8VKV_023 | No text annotation | ||
| HL_8VKV_024 | GNRA | ||
| HL_8VKV_025 | GNRA | ||
| HL_8VKV_026 | GNRA | ||
| HL_8VKV_027 | GNRA | ||
| HL_8VKV_028 | T-loop related | ||
| HL_8VKV_029 | No text annotation | ||
| HL_8VKV_030 | GNRA | ||
| HL_8VKV_031 | GNRA | ||
| HL_8VKV_032 | T-loop with 3 stacked bulged bases | ||
| HL_8VKV_034 | UNCG | ||
| HL_8VKV_038 | UNCG | ||
| HL_8VKV_045 | T-loop with unstacked turn | ||
| HL_8VKV_050 | No text annotation | ||
| HL_8VKV_058 | No text annotation | ||
| HL_8VKV_060 | No text annotation | ||
| HL_8VKV_061 | GNRA wlth tandem sheared | ||
| HL_8VKV_062 | No text annotation | ||
| HL_8VKV_070 | UNCG | ||
| HL_8VKV_074 | No text annotation | ||
| HL_8VKV_080 | UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8VKV_013 | 1/D/242:247, 1/D/277:284 | Kink-turn with non-sequential stacking | geometric IL_5J7L_014 NA | |
| IL_8VKV_023 | 1/D/504:511, 1/D/540:541 | SSU/LSU pseudoknot | geometric IL_5J7L_024 NA | |
| IL_8VKV_063 | 1/a/36:37, 1/a/442:444 | Single bulged A | geometric IL_5J7L_246 NA | |
| IL_8VKV_064 | 1/a/43:44, 1/a/434:436 | Minor groove platform | geometric IL_5J7L_247 NA | |
| IL_8VKV_065 | 1/a/81:85, 1/a/97:105 | No text annotation | geometric IL_5J7L_248 NA | |
| IL_8VKV_066 | 1/a/183:184, 1/a/212:214 | Single stack bend | geometric IL_4WF9_007 IL_15011.2 | |
| IL_8VKV_067 | 1/a/188:194, 1/a/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 NA | |
| IL_8VKV_068 | 1/a/239:245, 1/a/253:258 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5J7L_251 NA | |
| IL_8VKV_069 | 1/a/269:271, 1/a/366:370 | No text annotation | geometric IL_5J7L_252 NA | |
| IL_8VKV_071 | 1/a/293:295, 1/a/343:347 | No text annotation | geometric IL_5J7L_254 NA | |
| IL_8VKV_072 | 1/a/481:484, 1/a/496:509 | No text annotation | geometric IL_5J7L_255 NA | |
| IL_8VKV_073 | 1/a/536:539, 1/a/554:557 | Double sheared | geometric IL_5J7L_256 NA | |
| IL_8VKV_074 | 1/a/564:566, 1/a/575:577 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 NA | |
| IL_8VKV_075 | 1/a/606:610, 1/a/618:622 | AAA cross-strand stack | geometric IL_5J7L_258 NA | |
| IL_8VKV_076 | 1/a/672:674, 1/a/806:808 | Isolated non-canonical cWW pair | geometric IL_9DFE_015 IL_01003.2 | |
| IL_8VKV_077 | 1/a/674:678, 1/a/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 NA | |
| IL_8VKV_078 | 1/a/697:698, 1/a/763:765 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_8VKV_079 | 1/a/702:703, 1/a/728:730 | Single bulged G | geometric IL_5J7L_262 NA | |
| IL_8VKV_080 | 1/a/703:707, 1/a/724:728 | Triple sheared | geometric IL_9DFE_019 IL_15190.2 | |
| IL_8VKV_081 | 1/a/738:740, 1/a/757:758 | Major groove platform | geometric IL_5J7L_264 NA | |
| IL_8VKV_082 | 1/a/775:777, 1/a/787:791 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_8VKV_083 | 1/a/844:847, 1/a/933:934 | 90 degree turn | geometric IL_5J7L_267 NA | |
| IL_8VKV_084 | 1/a/844:848, 1/a/930:934 | No text annotation | geometric IL_5J7L_399 NA | |
| IL_8VKV_085 | 1/a/847:848, 1/a/930:933 | Stack outside cWW | geometric IL_5J7L_268 NA | |
| IL_8VKV_086 | 1/a/849:850, 1/a/927:929 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_8VKV_087 | 1/a/856:862, 1/a/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 NA | |
| IL_8VKV_088 | 1/a/862:863, 1/a/913:915 | Single bulged G | geometric IL_5J7L_271 NA | |
| IL_8VKV_089 | 1/a/864:868, 1/a/909:912 | C-loop with bulged stacked A's | geometric IL_5J7L_272 NA | |
| IL_8VKV_090 | 1/a/870:872, 1/a/905:907 | Isolated non-canonical cWW pair | geometric IL_5J7L_273 NA | |
| IL_8VKV_091 | 1/a/875:879, 1/a/898:902 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_8VKV_093 | 1/a/994:996, 1/a/1159:1160 | Single bulged C | geometric IL_5J7L_276 NA | |
| IL_8VKV_094 | 1/a/998:1002, 1/a/1153:1157 | UAA/GAN | geometric IL_4WF9_036 IL_08938.1 | |
| IL_8VKV_095 | 1/a/1004:1011, 1/a/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 NA | |
| IL_8VKV_096 | 1/a/1011:1013, 1/a/1149:1150 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_8VKV_097 | 1/a/1018:1024, 1/a/1140:1144 | Kink-turn related | geometric IL_5J7L_280 NA | |
| IL_8VKV_098 | 1/a/1024:1030, 1/a/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_8VKV_099 | 1/a/1031:1034, 1/a/1121:1123 | Isolated non-canonical cWW pair | geometric IL_5J7L_282 NA | |
| IL_8VKV_101 | 1/a/1043:1052, 1/a/1107:1112 | No text annotation | ||
| IL_8VKV_104 | 1/a/1196:1198, 1/a/1247:1250 | Isolated cWS basepair | geometric IL_4WF9_044 IL_42997.5 | |
| IL_8VKV_105 | 1/a/1202:1206, 1/a/1240:1243 | No text annotation | geometric IL_5J7L_287 NA | |
| IL_8VKV_106 | 1/a/1208:1215, 1/a/1234:1238 | Kink-turn | geometric IL_5J7L_288 NA | |
| IL_8VKV_107 | 1/a/1262:1269, 1/a/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_289 NA | |
| IL_8VKV_108 | 1/a/1310:1313, 1/a/1603:1604 | Major groove platform; stack outside cWW | geometric IL_4WF9_049 IL_74641.2 | |
| IL_8VKV_109 | 1/a/1319:1323, 1/a/1331:1333 | C-loop | geometric IL_5J7L_291 NA | |
| IL_8VKV_110 | 1/a/1351:1355, 1/a/1376:1380 | UAA/GAN | geometric IL_5J7L_292 NA | |
| IL_8VKV_111 | 1/a/1357:1361, 1/a/1370:1374 | tSH-tHW-tHS | geometric IL_5J7L_293 NA | |
| IL_8VKV_115 | 1/a/1417:1421, 1/a/1577:1581 | UAA/GAN | geometric IL_5J7L_295 NA | |
| IL_8VKV_116 | 1/a/1432:1435, 1/a/1557:1561 | Tandem non-canonical cWW pairs | geometric IL_5J7L_296 NA | |
| IL_8VKV_117 | 1/a/1437:1440, 1/a/1551:1555 | tSH-tHW | geometric IL_5J7L_297 NA | |
| IL_8VKV_118 | 1/a/1450:1451, 1/a/1459:1461 | Single bulged U | geometric IL_5J7L_298 NA | |
| IL_8VKV_119 | 1/a/1468:1471, 1/a/1520:1524 | No text annotation | geometric IL_5J7L_299 NA | |
| IL_8VKV_120 | 1/a/1474:1478, 1/a/1513:1517 | tSH-tHW-tHS | geometric IL_5J7L_300 NA | |
| IL_8VKV_121 | 1/a/1481:1482, 1/a/1507:1510 | 180 degree turn | geometric IL_5J7L_301 NA | |
| IL_8VKV_122 | 1/a/1489:1491, 1/a/1499:1500 | Single bulged A | geometric IL_5J7L_302 NA | |
| IL_8VKV_123 | 1/a/1526:1529, 1/a/1542:1546 | UAA/GAN variation | geometric IL_5J7L_303 NA | |
| IL_8VKV_124 | 1/a/1651:1656, 1/a/2004:2006 | No text annotation | geometric IL_5J7L_304 NA | |
| IL_8VKV_125 | 1/a/1663:1665, 1/a/1995:1997 | Isolated tWW turn | geometric IL_4WF9_063 IL_10432.1 | |
| IL_8VKV_126 | 1/a/1666:1669, 1/a/1993:1994 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 NA | |
| IL_8VKV_127 | 1/a/1666:1674, 1/a/1990:1994 | No text annotation | geometric IL_5J7L_386 NA | |
| IL_8VKV_128 | 1/a/1669:1674, 1/a/1990:1993 | Intercalated tWH | geometric IL_5J7L_307 NA | |
| IL_8VKV_129 | 1/a/1686:1691, 1/a/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 NA | |
| IL_8VKV_130 | 1/a/1712:1718, 1/a/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_5J7L_309 NA | |
| IL_8VKV_132 | 1/a/1770:1771, 1/a/1980:1982 | Single bulged A | geometric IL_7A0S_064 IL_14190.2 | |
| IL_8VKV_133 | 1/a/1798:1804, 1/a/1813:1821 | Kink-turn related | geometric IL_5J7L_313 NA | |
| IL_8VKV_134 | 1/a/1837:1840, 1/a/1902:1903 | Minor groove platform, major groove intercalation | geometric IL_5J7L_314 NA | |
| IL_8VKV_135 | 1/a/1841:1842, 1/a/1898:1901 | Major groove intercalation | geometric IL_8P9A_313 IL_71421.2 | |
| IL_8VKV_136 | 1/a/1846:1849, 1/a/1893:1894 | Major groove minor groove platform; mini C-loop | geometric IL_1S03_003 IL_73108.2 | |
| IL_8VKV_137 | 1/a/1851:1860, 1/a/1882:1891 | No text annotation | geometric IL_5J7L_387 NA | |
| IL_8VKV_138 | 1/a/1864:1867, 1/a/1874:1878 | UAA/GAN related | geometric IL_5J7L_317 NA | |
| IL_8VKV_139 | 1/a/1933:1934, 1/a/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_8VKV_140 | 1/a/2050:2052, 1/a/2617:2618 | Major groove platform | geometric IL_5J7L_320 NA | |
| IL_8VKV_141 | 1/a/2054:2056, 1/a/2612:2615 | No text annotation | geometric IL_5J7L_321 NA | |
| IL_8VKV_142 | 1/a/2070:2071, 1/a/2438:2441 | Minor groove platform | geometric IL_9DFE_081 IL_34520.2 | |
| IL_8VKV_143 | 1/a/2081:2083, 1/a/2236:2239 | Isolated tHS basepair with bulges | geometric IL_5J7L_325 NA | |
| IL_8VKV_144 | 1/a/2085:2087, 1/a/2232:2234 | Isolated non-canonical cWW pair | geometric IL_5J7L_326 NA | |
| IL_8VKV_150 | 1/a/2202:2204, 1/a/2220:2221 | Single bulged U | geometric IL_5J7L_331 NA | |
| IL_8VKV_151 | 1/a/2350:2353, 1/a/2364:2367 | Double sheared | geometric IL_5J7L_333 NA | |
| IL_8VKV_153 | 1/a/2459:2461, 1/a/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 NA | |
| IL_8VKV_154 | 1/a/2466:2470, 1/a/2480:2484 | Double sheared with non-canonical cWW | geometric IL_5J7L_338 NA | |
| IL_8VKV_155 | 1/a/2510:2512, 1/a/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
| IL_8VKV_156 | 1/a/2512:2513, 1/a/2571:2574 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_8VKV_157 | 1/a/2522:2523, 1/a/2540:2543 | Major groove platform with intercalation | geometric IL_7A0S_091 IL_94991.2 | |
| IL_8VKV_158 | 1/a/2591:2592, 1/a/2601:2603 | Single bulged A | geometric IL_1U9S_001 IL_14190.2 | |
| IL_8VKV_159 | 1/a/2636:2640, 1/a/2774:2782 | tSH-tHS-tHW | geometric IL_5J7L_345 NA | |
| IL_8VKV_160 | 1/a/2652:2658, 1/a/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 NA | |
| IL_8VKV_161 | 1/a/2680:2684, 1/a/2725:2727 | C-loop | geometric IL_5J7L_347 NA | |
| IL_8VKV_162 | 1/a/2687:2691, 1/a/2718:2722 | UAA/GAN related, with intercalation | geometric IL_5J7L_348 NA | |
| IL_8VKV_163 | 1/a/2695:2696, 1/a/2711:2714 | Multiple bulged bases | geometric IL_5J7L_349 NA | |
| IL_8VKV_164 | 1/a/2737:2742, 1/a/2762:2767 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_8VKV_165 | 1/a/2806:2811, 1/a/2889:2892 | No text annotation | geometric IL_5J7L_351 NA | |
| IL_8VKV_166 | 1/a/2838:2839, 1/a/2878:2880 | Major groove intercalation | geometric IL_5J7L_352 NA | |
| IL_8VKV_167 | 1/a/2843:2846, 1/a/2870:2874 | Multiple bulged bases with non-canonical cWW | geometric IL_5J7L_353 NA | |
| IL_8VKV_168 | 1/a/2847:2852, 1/a/2865:2869 | tHS double platform | geometric IL_5J7L_354 NA | |
| IL_8VKV_169 | 1/d/17:18, 1/d/65:67 | Major groove intercalation | geometric IL_5J7L_355 NA | |
| IL_8VKV_170 | 1/d/23:28, 1/d/56:60 | No text annotation | geometric IL_5J7L_356 NA | |
| IL_8VKV_171 | 1/d/30:31, 1/d/51:54 | Major groove minor groove platform; mini C-loop | geometric IL_5J7L_357 NA | |
| IL_8VKV_172 | 1/d/34:38, 1/d/44:48 | Symmetric double minor groove platform | geometric IL_5J7L_358 NA | |
| IL_8VKV_173 | 1/d/71:79, 1/d/97:105 | Bacterial 5S Loop E | geometric IL_5J7L_359 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8VKV_001 | Single bulged G | ||
| IL_8VKV_002 | Single bulged A | ||
| IL_8VKV_003 | No text annotation | ||
| IL_8VKV_004 | Minor groove platform | ||
| IL_8VKV_005 | Multiple bulged bases | ||
| IL_8VKV_006 | Minor groove platform with extra cWW | ||
| IL_8VKV_007 | Minor groove platform | ||
| IL_8VKV_008 | Single bulged G | ||
| IL_8VKV_009 | Isolated non-canonical cWW pair | ||
| IL_8VKV_010 | Minor groove platform related | ||
| IL_8VKV_011 | Isolated cWH basepair | ||
| IL_8VKV_012 | tWH-tWH-tHW-tHW | ||
| IL_8VKV_014 | No text annotation | ||
| IL_8VKV_015 | C-loop | ||
| IL_8VKV_016 | Single bulged U | ||
| IL_8VKV_017 | C-loop | ||
| IL_8VKV_018 | Single bulged G | ||
| IL_8VKV_019 | No text annotation | ||
| IL_8VKV_020 | No text annotation | ||
| IL_8VKV_021 | tSH-tHW-tWW | ||
| IL_8VKV_022 | No text annotation | ||
| IL_8VKV_024 | No text annotation | ||
| IL_8VKV_025 | tSH-tHW-tHS | ||
| IL_8VKV_026 | Major groove platform | ||
| IL_8VKV_027 | Major groove minor groove platform; mini C-loop | ||
| IL_8VKV_028 | No text annotation | ||
| IL_8VKV_029 | Major groove platform; stack outside cWW | ||
| IL_8VKV_030 | Single stack bend | ||
| IL_8VKV_031 | Tandem non-canonical cWW pairs | ||
| IL_8VKV_032 | Triple non-canonical cWW pairs | ||
| IL_8VKV_033 | Kink-turn | ||
| IL_8VKV_034 | Left turn | ||
| IL_8VKV_035 | tSH-tHW-tHS | ||
| IL_8VKV_036 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8VKV_037 | Single bulged A | ||
| IL_8VKV_038 | Single bulged G | ||
| IL_8VKV_039 | Minor groove platform | ||
| IL_8VKV_040 | Minor groove platform | ||
| IL_8VKV_041 | Minor groove platform | ||
| IL_8VKV_042 | Single stack bend | ||
| IL_8VKV_043 | No text annotation | ||
| IL_8VKV_044 | Single bulged U | ||
| IL_8VKV_045 | Isolated cWS basepair | ||
| IL_8VKV_046 | Minor groove platform | ||
| IL_8VKV_047 | Single bulged A | ||
| IL_8VKV_048 | Isolated non-canonical cWW pair | ||
| IL_8VKV_049 | No text annotation | ||
| IL_8VKV_050 | Minor groove platform | ||
| IL_8VKV_051 | No text annotation | ||
| IL_8VKV_052 | No text annotation | ||
| IL_8VKV_053 | 180 degree turn | ||
| IL_8VKV_054 | Double sheared with non-canonical cWW | ||
| IL_8VKV_055 | No text annotation | ||
| IL_8VKV_056 | No text annotation | ||
| IL_8VKV_057 | Isolated non-canonical cWW pair | ||
| IL_8VKV_058 | Double sheared | ||
| IL_8VKV_059 | Triple sheared related | ||
| IL_8VKV_060 | Single bulged A | ||
| IL_8VKV_061 | No text annotation | ||
| IL_8VKV_062 | Triple sheared with non-canonical cWW | ||
| IL_8VKV_070 | No text annotation | ||
| IL_8VKV_092 | Single bulged A | ||
| IL_8VKV_100 | Tandem non-canonical cWW pairs | ||
| IL_8VKV_102 | No text annotation | ||
| IL_8VKV_103 | Major groove platform | ||
| IL_8VKV_112 | Single stack bend | ||
| IL_8VKV_113 | Single stack bend | ||
| IL_8VKV_114 | No text annotation | ||
| IL_8VKV_131 | Triple sheared | ||
| IL_8VKV_145 | Isolated non-canonical cWW pair | ||
| IL_8VKV_146 | Isolated non-canonical cWW pair | ||
| IL_8VKV_147 | No text annotation | ||
| IL_8VKV_148 | No text annotation | ||
| IL_8VKV_149 | Kink-turn | ||
| IL_8VKV_152 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8VKV_017 | 1/a/30:31, 1/a/474:481, 1/a/509:510 | No text annotation | geometric J3_5J7L_036 NA | |
| J3_8VKV_018 | 1/a/30:31, 1/a/474:484, 1/a/496:510 | No text annotation | geometric J3_5J7L_066 NA | |
| J3_8VKV_019 | 1/a/32:35, 1/a/445:461, 1/a/468:473 | No text annotation | geometric J3_5J7L_067 NA | |
| J3_8VKV_020 | 1/a/56:57, 1/a/70:76, 1/a/110:114 | No text annotation | geometric J3_5J7L_037 NA | |
| J3_8VKV_021 | 1/a/297:301, 1/a/316:325, 1/a/337:341 | No text annotation | geometric J3_5J7L_068 NA | |
| J3_8VKV_022 | 1/a/683:689, 1/a/773:775, 1/a/791:794 | No text annotation | geometric J3_5J7L_038 NA | |
| J3_8VKV_023 | 1/a/698:700, 1/a/732:736, 1/a/760:763 | No text annotation | geometric J3_5J7L_039 NA | |
| J3_8VKV_025 | 1/a/1298:1303, 1/a/1625:1627, 1/a/1639:1642 | No text annotation | geometric J3_5J7L_041 NA | |
| J3_8VKV_026 | 1/a/1306:1309, 1/a/1605:1611, 1/a/1620:1622 | No text annotation | geometric J3_7A0S_007 J3_47341.1 | |
| J3_8VKV_027 | 1/a/1344:1349, 1/a/1382:1385, 1/a/1402:1403 | No text annotation | geometric J3_5J7L_043 NA | |
| J3_8VKV_028 | 1/a/1424:1429, 1/a/1564:1565, 1/a/1568:1574 | No text annotation | geometric J3_5J7L_069 NA | |
| J3_8VKV_029 | 1/a/2091:2093, 1/a/2196:2200, 1/a/2223:2228 | Kink-turn 3-way junction | geometric J3_5J7L_044 NA | |
| J3_8VKV_030 | 1/a/2282:2284, 1/a/2384:2395, 1/a/2421:2427 | No text annotation | geometric J3_5J7L_070 NA | |
| J3_8VKV_031 | 1/a/2295:2299, 1/a/2317:2323, 1/a/2332:2337 | No text annotation | geometric J3_5J7L_071 NA | |
| J3_8VKV_032 | 1/a/2517:2520, 1/a/2545:2547, 1/a/2561:2567 | No text annotation | ||
| J3_8VKV_034 | 1/a/2812:2815, 1/a/2831:2836, 1/a/2882:2888 | No text annotation | ||
| J3_8VKV_035 | 1/d/10:16, 1/d/68:70, 1/d/106:110 | No text annotation | geometric J3_5J7L_049 NA | |
| J4_8VKV_006 | 1/a/268:269, 1/a/370:375, 1/a/399:406, 1/a/421:424 | No text annotation | ||
| J4_8VKV_007 | 1/a/297:301, 1/a/316:319, 1/a/323:325, 1/a/337:341 | No text annotation | ||
| J4_8VKV_008 | 1/a/601:604, 1/a/624:628, 1/a/635:638, 1/a/650:656 | No text annotation | ||
| J4_8VKV_009 | 1/a/1270:1276, 1/a/1294:1295, 1/a/1645:1648, 1/a/2009:2010 | No text annotation | ||
| J4_8VKV_010 | 1/a/1310:1314, 1/a/1338:1343, 1/a/1404:1405, 1/a/1597:1604 | No text annotation | ||
| J4_8VKV_011 | 1/a/1313:1314, 1/a/1338:1343, 1/a/1404:1405, 1/a/1597:1603 | No text annotation | ||
| J4_8VKV_012 | 1/a/1444:1445, 1/a/1466:1467, 1/a/1525:1526, 1/a/1546:1547 | No text annotation | ||
| J4_8VKV_013 | 1/a/1772:1776, 1/a/1788:1792, 1/a/1827:1830, 1/a/1975:1979 | No text annotation | ||
| J4_8VKV_014 | 1/a/2285:2289, 1/a/2343:2347, 1/a/2370:2372, 1/a/2381:2383 | No text annotation | ||
| J4_8VKV_015 | 1/a/2643:2646, 1/a/2674:2676, 1/a/2731:2735, 1/a/2769:2771 | No text annotation | ||
| J5_8VKV_003 | 1/D/58:61, 1/D/106:113, 1/D/314:316, 1/D/337:339, 1/D/350:354 | No text annotation | ||
| J5_8VKV_004 | 1/a/47:54, 1/a/116:121, 1/a/130:131, 1/a/148:150, 1/a/176:178 | No text annotation | ||
| J5_8VKV_005 | 1/a/531:533, 1/a/560:564, 1/a/577:579, 1/a/1261:1262, 1/a/2017:2018 | No text annotation | ||
| J5_8VKV_006 | 1/a/584:589, 1/a/668:671, 1/a/809:812, 1/a/1195:1196, 1/a/1250:1256 | No text annotation | ||
| J5_8VKV_007 | 1/a/1674:1682, 1/a/1706:1707, 1/a/1751:1752, 1/a/1756:1764, 1/a/1988:1990 | No text annotation | ||
| J6_8VKV_001 | 1/a/45:46, 1/a/179:183, 1/a/214:224, 1/a/231:235, 1/a/262:266, 1/a/426:433 | No text annotation | ||
| J7_8VKV_001 | 1/a/8:15, 1/a/525:531, 1/a/2018:2023, 1/a/2040:2043, 1/a/2625:2630, 1/a/2788:2789, 1/a/2894:2895 | No text annotation | ||
| J7_8VKV_002 | 1/a/817:822, 1/a/835:838, 1/a/940:946, 1/a/971:976, 1/a/987:991, 1/a/1163:1164, 1/a/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8VKV_001 | No text annotation | ||
| J3_8VKV_002 | No text annotation | ||
| J3_8VKV_003 | No text annotation | ||
| J3_8VKV_004 | No text annotation | ||
| J3_8VKV_005 | No text annotation | ||
| J3_8VKV_006 | No text annotation | ||
| J3_8VKV_007 | No text annotation | ||
| J3_8VKV_008 | No text annotation | ||
| J3_8VKV_009 | No text annotation | ||
| J3_8VKV_010 | No text annotation | ||
| J3_8VKV_011 | No text annotation | ||
| J3_8VKV_012 | No text annotation | ||
| J3_8VKV_013 | No text annotation | ||
| J3_8VKV_014 | No text annotation | ||
| J3_8VKV_015 | No text annotation | ||
| J3_8VKV_016 | No text annotation | ||
| J3_8VKV_024 | No text annotation | ||
| J3_8VKV_033 | No text annotation | ||
| J4_8VKV_001 | No text annotation | ||
| J4_8VKV_002 | No text annotation | ||
| J4_8VKV_003 | No text annotation | ||
| J4_8VKV_004 | No text annotation | ||
| J4_8VKV_005 | No text annotation | ||
| J5_8VKV_001 | No text annotation | ||
| J5_8VKV_002 | No text annotation |
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