HL_8VKV_032

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKV_032 not in the Motif Atlas

Geometric match to HL_4LFB_029

Geometric discrepancy: 0.0873

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8VKV|1|D|C|1314
8VKV|1|D|U|1315
8VKV|1|D|G|1316
8VKV|1|D|C|1317
8VKV|1|D|A|1318
8VKV|1|D|A|1319
8VKV|1|D|C|1320
8VKV|1|D|U|1321
8VKV|1|D|C|1322
8VKV|1|D|G|1323

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14

Chain W

30S ribosomal protein S19

Chain X

30S ribosomal protein S13