HL_8VKV_040
3D structure
- PDB id
- 8VKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAACAUC
- Length
- 8 nucleotides
- Bulged bases
- 8VKV|1|a|A|196, 8VKV|1|a|A|199
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VKV_040 not in the Motif Atlas
- Geometric match to HL_5J7L_139
- Geometric discrepancy: 0.0803
- The information below is about HL_5J7L_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_30068.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8VKV|1|a|G|194
8VKV|1|a|A|195
8VKV|1|a|A|196
8VKV|1|a|A|197
8VKV|1|a|C|198
8VKV|1|a|A|199
8VKV|1|a|U|200
8VKV|1|a|C|201
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L28
- Chain u
- 50S ribosomal protein L15
Coloring options: