HL_8VKV_050

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

8VKV|1|a|U|546, 8VKV|1|a|A|547, 8VKV|1|a|G|548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKV_050 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2653

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8VKV|1|a|C|544
8VKV|1|a|U|545
8VKV|1|a|U|546
8VKV|1|a|A|547
8VKV|1|a|G|548
8VKV|1|a|G|549

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

Ribosomal protein L21